Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01648 ATGGAAAACCCGAGAGCTCGAGGGGAAGGAGGTGAATGCATAGGAGGTAACTTGAGAGCTCAAGGGGAAAGAAGTGAACACATAAGATTATTGAATATCTTCGTCGCTACGGCTACATCCACGCGCGGAGTTTGGCGGTCGCGGATCGTCGATAGCGTAGCGTCGGCCGGGTCGGATTCTGAGATTAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGGTCTTTCATCTTTCTCCTCTTTTTGTTCAATTTTGTTGTCTCTTAATACTTCTCGATCTTTATTTCATTCCATTGTTCCATTTTGTGTGAATTTTTTCCCGTTATGTCTTTTTTTCCTGAGTGAAATTCATAATATGCGTAAAATCTTGGTGGTTTCTACTAGTATGGTGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTTAAGCTTTTTCAATTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCCAAGGAAATTCTTCACCAAATCGATAATCCATCTCCTGCTTCACAAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTACTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTATGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCGATTTGTCGACATGAATTGCCCACCGACGACCACAAATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATCATTCACAATATGGAAACATCTCTCACCTCCGCCGCCGGCGCCACCATTTTGTCGTCCTCTTCCGCCGTCTTTGGCCGCCGACGTCGATGGATTCTCATATCCAACAAAACTAACAGATGCAAATATACTCTCAAGAGAGGAATTGAAGATCGTTTTCCCCTTTTCAATGAATTTTCAGAGCGAACTGGTACATTAGTCTCGAGAACTTCATCTGCTTCTATGAACAAGATGATCTCGAGTAGATATGGTGGTAGAAATTCGAATATCAACAAGATTTACAAGCGATTGGAATCTTGTTTGGTGATACCACCGCCTAGGGGTAAGCCACCTCGCGCTATCGTCCAGTTCCTCGGCGGCGCTTTCATCGGAGCTATTCCTGAAGTCACTTACGGCTACTTAATTGAGCTTTTGGCAAAGAAAGGGTTTCTGATAATCTCAGTACCTTACAATGTGACTTTCGATCATGCCGATGCTGCGAGACAAGTATTTGAGAGGTTTCATGCCTGTTTGGATACCATTGTAGCGTCCGGATTGCCCGATGAAGATATTTCACCTGCTCAACTCGTTAATCTTCCTCTTTTTTCTGTGGGTCATAGCAATGGCGCGCTTCTGCAAGTACTCACAGGGAGCTATTTCTCTGAGAAGATACCTAAGGCTAATGCTATAATCTCCTTCAACAACAGGCCAGCAACAGAGGCTGTTCCTTACTTTGAGCAGTTGGGCCCTTTAACCAGTCAGATGATGCCTGTTGTACAAGCATCTCCAGTTTACTCAATGGCGAGGAGTGTCTCAGGGGATGCATGGAAGATCTTGCTTGATGCTGCTGGAGCTATTGTTCCAGACAGAGATCAAGAAGTCTTGAATTCTCTGACCAATTTTGTTGATCAGTTGCCCTCAGTGTTTAACCAGGTGACGGAAGGGGTTTCGGAGTTCAGGCCAACTCCATCTGAGAATCGAGATTGCTTCAAGTGTAATTACAATGTCCAAAACACTCTCCTGGTGAAGTTCATTTCAGACACGATTGATGAGACCGATCTACTTGAACAGACACTGAAGACTCGCGTTGAATCTATTAATGGCACGCTCGAGAAGGTTGAGTTAAGTGGTAACCACATCACACCTTGTGTACAGGAACCAAAGTGGGAGGTAGGTTATTTGTACACTCCCGCAGATGCTGTTGCTCAGGCGCTTAAATCTCTATCTTTGAGAGAAACAAGAGAGCTTGCTAAAACCTTATGCAACTGGTTCAAGGTTTCTTTTACTCTTCTTTATTAA 2541 44.75 MENPRARGEGGECIGGNLRAQGERSEHIRLLNIFVATATSTRGVWRSRIVDSVASAGSDSEIKIGGIAQRLGEETEIRGSSFHHYFSASRSLSYCFSFITQIGLSSFSSFCSILLSLNTSRSLFHSIVPFCVNFFPLCLFFLSEIHNMRKILVVSTSMVFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENATNILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVIMITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYIIHNMETSLTSAAGATILSSSSAVFGRRRRWILISNKTNRCKYTLKRGIEDRFPLFNEFSERTGTLVSRTSSASMNKMISSRYGGRNSNINKIYKRLESCLVIPPPRGKPPRAIVQFLGGAFIGAIPEVTYGYLIELLAKKGFLIISVPYNVTFDHADAARQVFERFHACLDTIVASGLPDEDISPAQLVNLPLFSVGHSNGALLQVLTGSYFSEKIPKANAIISFNNRPATEAVPYFEQLGPLTSQMMPVVQASPVYSMARSVSGDAWKILLDAAGAIVPDRDQEVLNSLTNFVDQLPSVFNQVTEGVSEFRPTPSENRDCFKCNYNVQNTLLVKFISDTIDETDLLEQTLKTRVESINGTLEKVELSGNHITPCVQEPKWEVGYLYTPADAVAQALKSLSLRETRELAKTLCNWFKVSFTLLY 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27960626 27974780 - ClCG05G015960.2 Cla05g01648 273138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01648 846 SUPERFAMILY alpha/beta-Hydrolases 523 637 IPR029058 -
Cla05g01648 846 Coils Coil 395 415 - -
Cla05g01648 846 PANTHER OS04G0405600 PROTEIN 489 840 IPR010765 -
Cla05g01648 846 CDD RING-H2_RNF126_like 343 385 - -
Cla05g01648 846 SUPERFAMILY RING/U-box 338 391 - -
Cla05g01648 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 391 IPR013083 -
Cla05g01648 846 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Cla05g01648 846 Pfam Ring finger domain 343 385 IPR001841 -
Cla05g01648 846 Gene3D alpha/beta hydrolase 510 722 IPR029058 -
Cla05g01648 846 PANTHER INITIATION FACTOR 4F SUBUNIT (DUF1350) 489 840 - -
Cla05g01648 846 Pfam Protein of unknown function (DUF1350) 530 838 IPR010765 -
Cla05g01648 846 SMART ring_2 344 384 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01648 Cla-Chr5:27960626 Cla10g01254 Cla-Chr10:27385926 2.17E-37 dispersed
Cla05g01648 Cla-Chr5:27960626 Cla10g02021 Cla-Chr10:35997652 1.22E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01648 - - csv:101217829 733.791