Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01652 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGCGTCTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGTAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCTCCAGTTGAGGAGTTGTCACAAATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTGGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACCGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGAGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGGCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTGGTTCTGGAGGGACGTATAGCCGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACAGCCGATAACTCAACAGTTTCGGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCATAAACACGGTGATAGAAATCACTTGCATTGTGATGCACTAGGAACCCCAAGCAAGAGCGAAACCACAATGAATGGAAACAGAGAAAACAAGTCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCACTACCAACCCTTTTTAAGAGGTACATGCAAGCGAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGCCATCTCACTGTTTCCAGCCGAGAAAACCATGGATCTACATTTACATTTGTGTTGCCATACAAGGTTTCAACCACCTGTAGTCCTTCCGACGATTCCGACGAGCTCTCGGATGACGAGTCTACAAATGATGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTTAGTTCCCTATCATCTTCCAACGGATCCACAAGGATCCCAAACTCATTGATGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTTGCTGAAGGTGGTTCTTATCCTATTCCCTCAAACAACATCGCACCACAACAGACTGCTTCTCCTAGAGATGCCCGTTACACCAATGCCGCAGTAAACTCAAGCGAGTCACAATGTTTATCAAGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGACACAAATGCTTGGTTGCAAAATGCCAGTGGCGTGAATTCTGTTTACAGATCAGAAACAACAAAGCAAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTTGTGGTTCTGAAGTAACAGTGGCATTGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTTGGCCAAAAAATCGATGTCGTAACTAACGGTATTGAAGCTGTTCGTGCAGTTCAACGACGTTCGTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATAATCCAACCAACTACACCTTCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCTCCCTTGTAA 3009 41.61 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLAGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVSVNGLQEGTCLPAPQNGLCGHKHGDRNHLHCDALGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLMHTTGYPTSTKLNGFAEGGSYPIPSNNIAPQQTASPRDARYTNAAVNSSESQCLSSQINSNLDNQNQSDTNAWLQNASGVNSVYRSETTKQEDRLEKQSNKLQKTDQGKERSDASNHCRNSSCGSEVTVALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPSWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKECLERYLPQPPL 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28058634 28067049 + ClCG05G016010.2 Cla05g01652 273142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01652 1002 Gene3D - 367 435 - -
Cla05g01652 1002 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 998 - -
Cla05g01652 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cla05g01652 1002 Gene3D - 853 997 - -
Cla05g01652 1002 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cla05g01652 1002 Pfam Response regulator receiver domain 858 925 IPR001789 GO:0000160
Cla05g01652 1002 MobiDBLite consensus disorder prediction 747 771 - -
Cla05g01652 1002 Gene3D - 436 676 IPR036890 -
Cla05g01652 1002 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cla05g01652 1002 SUPERFAMILY CheY-like 856 998 IPR011006 -
Cla05g01652 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cla05g01652 1002 Coils Coil 181 208 - -
Cla05g01652 1002 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 998 - -
Cla05g01652 1002 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cla05g01652 1002 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cla05g01652 1002 SMART REC_2 856 993 IPR001789 GO:0000160
Cla05g01652 1002 Coils Coil 808 828 - -
Cla05g01652 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cla05g01652 1002 Coils Coil 92 112 - -
Cla05g01652 1002 Coils Coil 342 362 - -
Cla05g01652 1002 SMART HKATPase_4 482 672 IPR003594 -
Cla05g01652 1002 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cla05g01652 1002 MobiDBLite consensus disorder prediction 807 846 - -
Cla05g01652 1002 ProSiteProfiles Response regulatory domain profile. 857 997 IPR001789 GO:0000160
Cla05g01652 1002 MobiDBLite consensus disorder prediction 745 771 - -
Cla05g01652 1002 MobiDBLite consensus disorder prediction 810 839 - -
Cla05g01652 1002 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cla05g01652 1002 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cla05g01652 1002 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cla05g01652 1002 Gene3D PAS domain 213 348 - -
Cla05g01652 1002 CDD REC_hyHK_CKI1_RcsC-like 858 993 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01652 - - - csv:101219807 1772.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01652 Cla-Chr5:28058634 Cla11g00097 Cla-Chr11:1275702 1.24E-19 dispersed
Cla05g01652 Cla-Chr5:28058634 Cla02g00275 Cla-Chr2:2706911 4.00E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00064 . 5 1220 Histidine Kinase Gene Family AT2G17820 64.2 0.0e+00 1453.0
Cla11g00097 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cla01g00654 . 24 981 Histidine Kinase Gene Family AT2G01830 67.6 0.0e+00 1238.8
Cla02g00275 . 279 1266 Histidine Kinase Gene Family AT2G01830 51.8 1.9e-269 926.0
Cla06g00204 . 97 1043 Histidine Kinase Gene Family AT2G01830 52.6 4.4e-263 904.8
Cla02g00917 . 304 1273 Histidine Kinase Gene Family AT2G01830 50.8 1.2e-260 896.7
Cla05g01652 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.8e-292 1000.0
Cla08g00910 . 156 1275 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1829.3
Cla08g00913 . 12 1104 Histidine Kinase Gene Family AT1G09570 71.7 0.0e+00 1574.7
Cla05g00707 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Cla02g00291 . 97 1176 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1180.6
Cla05g00707 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cla03g00672 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Cla08g00910 . 176 1209 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cla02g00291 . 105 1133 Histidine Kinase Gene Family AT2G18790 51.7 4.8e-308 1054.3
Cla08g00913 . 12 1038 Histidine Kinase Gene Family AT2G18790 50.9 9.4e-304 1040.0
Cla02g00291 . 91 1180 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1335.9
Cla05g00707 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Cla08g00910 . 164 1269 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.8
Cla05g00707 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Cla03g00672 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Cla08g00910 . 163 1270 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1135.6
Cla02g00291 . 105 1179 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1095.5
Cla03g00672 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Cla05g00707 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61104 PF02518 HATPase_c 9.70E-28 CL0025 Cla TR