Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01655 | ATGGTTTTTGGTCTAACTTGTCGATTCTCCGCTATATGGTTGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGCGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGTCTACCTTCCCTGCTTGCCTACCGAATTCCGTCGTCTGCCGCGAGCTAGGTCTACCGTCCAGTTGCATCGCTTGCCGCGAGCCAGTGTCGCTCCTGAACTTAATGCATCTATATGATAATGTGAGCAGGGTAGGCTTGGATAGAGACTTGAATGCACAACTGTTTAGTCAGTTTGAAGACCCGAATCAATATATTAACCGTGATCCTGAATTAGTTGCTCCAGCATGTGATGATGAAAATATGGTGGCTGATAATCAATATAATGATTTTAGAACGGAAACAAACGATGAATTTGAGTTGGACTTTGATGATCGTGAACATGATATACCTTCAGATACATTCATTGATCCGAATATGAATATAATAGATAGCGTTAGAGAACACAAGTTGTAG | 1395 | 44.87 | MVFGLTCRFSAIWLFQFNLGRWAAPRACEERLIPSTSSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSGSTFPACLPNSVVCRELGLPSSCIACREPVSLLNLMHLYDNVSRVGLDRDLNAQLFSQFEDPNQYINRDPELVAPACDDENMVADNQYNDFRTETNDEFELDFDDREHDIPSDTFIDPNMNIIDSVREHKL | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28135087 | 28146125 | - | ClCG05G016040.2 | Cla05g01655 | 273145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01655 | 464 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 44 | 328 | - | - | |
| Cla05g01655 | 464 | ProSiteProfiles | PPM-type phosphatase domain profile. | 75 | 321 | IPR001932 | - | |
| Cla05g01655 | 464 | SUPERFAMILY | PP2C-like | 69 | 321 | IPR036457 | - | |
| Cla05g01655 | 464 | SMART | PP2C_SIG_2 | 86 | 321 | IPR001932 | - | |
| Cla05g01655 | 464 | SMART | PP2C_4 | 65 | 319 | IPR001932 | - | |
| Cla05g01655 | 464 | PANTHER | ALPHABET, ISOFORM E-RELATED | 44 | 328 | - | - | |
| Cla05g01655 | 464 | ProSitePatterns | PPM-type phosphatase domain signature. | 106 | 114 | IPR000222 | GO:0043169 | |
| Cla05g01655 | 464 | Gene3D | - | 67 | 326 | IPR036457 | - | |
| Cla05g01655 | 464 | CDD | PP2Cc | 74 | 321 | IPR001932 | - | |
| Cla05g01655 | 464 | Pfam | Protein phosphatase 2C | 104 | 314 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00953 | Cla-Chr5:9494823 | Cla05g01655 | Cla-Chr5:28135087 | 2.50E-114 | dispersed | |
| Cla05g01655 | Cla-Chr5:28135087 | Cla08g00652 | Cla-Chr8:18724501 | 3.93E-119 | dispersed | |
| Cla06g00561 | Cla-Chr6:6804192 | Cla05g01655 | Cla-Chr5:28135087 | 6.18E-19 | dispersed | |
| Cla09g00444 | Cla-Chr9:4222654 | Cla05g01655 | Cla-Chr5:28135087 | 2.83E-40 | dispersed | |
| Cla09g01646 | Cla-Chr9:32812858 | Cla05g01655 | Cla-Chr5:28135087 | 1.04E-21 | dispersed | |
| Cla11g00810 | Cla-Chr11:12099219 | Cla05g01655 | Cla-Chr5:28135087 | 6.59E-45 | dispersed | |
| Cla11g01835 | Cla-Chr11:31986111 | Cla05g01655 | Cla-Chr5:28135087 | 2.08E-43 | dispersed | |
| Cla05g01655 | Cla-Chr5:28135087 | Cla11g01750 | Cla-Chr11:31111961 | 2.03E-63 | transposed | |
| Cla05g01655 | Cla-Chr5:28135087 | Cla07g00237 | Cla-Chr7:2622852 | 4.86E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01655 | K17506 | - | csv:101216117 | 574.704 |