Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01670 ATGGGTATTTACCTCAGCAATCCCAAAACAGAGAAGTCCTCTGAAGATGGTGAGAATAGACGGCTTAGATATGGACTATCGTCTATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCTGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGAATGCATGTCTCTGTCAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAGGTGAAGAAAAATGACACTTTTGCGGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTTCAGTGGATCTGGATGCTGTTTCTCTGAATTTAAAGAAATAGGTGGTTCTTTAAAGGAGGGAAAGGAGATAAGAAGTTCTCATGATCATTTGATTTTTCCATTTCTCAAAGGGGACACTAACTATGAGACGCATTGGTTGTTGAAAAAAATACTACTTAAGGAAGATGTCTTCCTTGGTTGGTCTATTGCATTCTTTGTTGAAGGTGGAGGAAGGCCTAAATCATTTACTTTGGAATTGCAACGATGGTTGGTCAGTCTGGAGAAGGGGAGATTTTATGGCAAGCTAGGGTGTTTGCTTTGTTGTGGTGTTTTCGGGAGAGAGAAACAATATAGTTTTCAAAGGGTTGATAGGGATTCTTTGATGTTTGGTCCCTTAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCAAAAAGCAGTGATGCAAATGACCTGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAACTTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTAGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGATTTTCAGAACTTTGGACAAGGCATGTATGTTGCACGTGGATATAGATGTACAGTTGAGGAGTTTAGCCCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATTACTGCAAACCCTGATGTAACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAACTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACTGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATAATCAATCAAACTCCCCCATAGATGGCCAAACTTCACCTGCCGCCACTGCCTGTGCCAAACCAGACAGTACCGAATCGATGCAGAAAGATGAATTGAGCCACAGACTTTGA 1563 42.42 MGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDACTSFFGVYDGHGGKNACLCQVVAKFCAKYLHQQVKKNDTFAAGDIGTSVQKAFFSGSGCCFSEFKEIGGSLKEGKEIRSSHDHLIFPFLKGDTNYETHWLLKKILLKEDVFLGWSIAFFVEGGGRPKSFTLELQRWLVSLEKGRFYGKLGCLLCCGVFGREKQYSFQRVDRDSLMFGPLMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQIFRTLDKACMLHVDIDVQLRSLAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSETKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDNQSNSPIDGQTSPAATACAKPDSTESMQKDELSHRL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28375353 28384237 - ClCG05G016200.1 Cla05g01670 273160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01670 520 Gene3D - 1 126 IPR036457 -
Cla05g01670 520 Gene3D - 228 482 IPR036457 -
Cla05g01670 520 MobiDBLite consensus disorder prediction 486 507 - -
Cla05g01670 520 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cla05g01670 520 SUPERFAMILY PP2C-like 3 482 IPR036457 -
Cla05g01670 520 MobiDBLite consensus disorder prediction 486 520 - -
Cla05g01670 520 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 228 494 - -
Cla05g01670 520 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 102 - -
Cla05g01670 520 PANTHER PROTEIN PHOSPHATASE 2C 228 494 IPR015655 GO:0004722|GO:0006470
Cla05g01670 520 Pfam Protein phosphatase 2C 23 101 IPR001932 -
Cla05g01670 520 Pfam Protein phosphatase 2C 285 465 IPR001932 -
Cla05g01670 520 ProSiteProfiles PPM-type phosphatase domain profile. 23 481 IPR001932 -
Cla05g01670 520 PANTHER PROTEIN PHOSPHATASE 2C 1 102 IPR015655 GO:0004722|GO:0006470
Cla05g01670 520 SMART PP2C_4 13 479 IPR001932 -
Cla05g01670 520 CDD PP2Cc 23 481 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01670 Cla-Chr5:28375353 Cla11g01835 Cla-Chr11:31986111 2.02E-28 dispersed
Cla05g01670 Cla-Chr5:28375353 Cla09g00303 Cla-Chr9:2908885 3.15E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01670 K17499 - csv:101211604 482.641