Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01671 | ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAAGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAACAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTTGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACAGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGTTCCTACTATTGTGCCTAGTGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAACGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCCCGACGGGTCAATGATGTATATTTCAGCCGTTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCAGGAACCAGGAAAATGCCTGGGATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCCAGATCCCGAGTAATGCCAAGGGGCGAAACCGGAGGTCCTATTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCCGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCGAAGCCTGTAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAACTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGAAAAGGATATAGGTACCGGGTGCCTTCTATATGGGTCGATGATGGATGATATCGGCATTGATCTACCAAAAGCACCAAGCAATTTCGGTGAGATTCTCGGGAAGTTAATTTTGATCAGAGGTCTGGATTTCGCTGTTGTGAAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTGCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA | 2334 | 46.19 | MQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKVPTIVPSDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRVMPRGETGGPIARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPVAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTEKDIGTGCLLYGSMMDDIGIDLPKAPSNFGEILGKLILIRGLDFAVVKEILKKVEDNYLQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA | 777 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28393446 | 28399022 | - | ClCG05G016210.2 | Cla05g01671 | 273161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01671 | 777 | SUPERFAMILY | ARM repeat | 187 | 429 | IPR016024 | - | |
| Cla05g01671 | 777 | Gene3D | - | 609 | 765 | - | - | |
| Cla05g01671 | 777 | ProSiteProfiles | MI domain profile. | 611 | 733 | IPR003891 | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 25 | 39 | - | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 99 | 142 | - | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 526 | 545 | - | - | |
| Cla05g01671 | 777 | Gene3D | - | 185 | 427 | - | - | |
| Cla05g01671 | 777 | SUPERFAMILY | ARM repeat | 608 | 763 | IPR016024 | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 99 | 115 | - | - | |
| Cla05g01671 | 777 | SMART | ma3_7 | 612 | 724 | IPR003891 | - | |
| Cla05g01671 | 777 | Pfam | MIF4G domain | 194 | 426 | IPR003890 | GO:0003723|GO:0005515 | |
| Cla05g01671 | 777 | SMART | if4_15 | 194 | 426 | IPR003890 | GO:0003723|GO:0005515 | |
| Cla05g01671 | 777 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 1 | 776 | IPR045208 | GO:0003743 | |
| Cla05g01671 | 777 | PANTHER | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 | 1 | 776 | - | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 516 | 545 | - | - | |
| Cla05g01671 | 777 | Pfam | MA3 domain | 612 | 722 | IPR003891 | - | |
| Cla05g01671 | 777 | MobiDBLite | consensus disorder prediction | 561 | 581 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01671 | Cla-Chr5:28393446 | Cla06g00804 | Cla-Chr6:11136940 | 4.03E-61 | dispersed | |
| Cla03g00317 | Cla-Chr3:3802077 | Cla05g01671 | Cla-Chr5:28393446 | 1.39E-07 | transposed | |
| Cla05g01671 | Cla-Chr5:28393446 | Cla06g01250 | Cla-Chr6:25683610 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01671 | K03260 | - | csv:101211356 | 1303.5 |