Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01681 ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAGCAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATCGATATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAAAGCACATATCGACCCTTATTATGGCCATGGTCAGATTCTCCATCCACTTGAGATAAGGGAACCTGATTCCTTCTGTTCCCATATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 570 46.84 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQVKAHIDPYYGHGQILHPLEIREPDSFCSHIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28466870 28469767 - ClCG05G016320.2 Cla05g01681 273171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01681 189 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Cla05g01681 189 PIRSF Transl_init_eIF5A 1 141 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla05g01681 189 PIRSF Transl_init_eIF5A 134 186 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla05g01681 189 Gene3D - 86 133 IPR012340 -
Cla05g01681 189 PANTHER BNAA07G09420D PROTEIN 150 185 - -
Cla05g01681 189 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 150 185 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla05g01681 189 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla05g01681 189 CDD S1_eIF5A 86 185 - -
Cla05g01681 189 Gene3D - 1 85 IPR014722 -
Cla05g01681 189 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla05g01681 189 TIGRFAM eIF_5A: translation elongation factor IF5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cla05g01681 189 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cla05g01681 189 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g01681 189 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 154 183 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla05g01681 189 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 131 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla05g01681 189 SUPERFAMILY Nucleic acid-binding proteins 137 185 IPR012340 -
Cla05g01681 189 Gene3D - 137 187 IPR012340 -
Cla05g01681 189 SMART eIF_5a_2 85 183 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cla05g01681 189 SUPERFAMILY Nucleic acid-binding proteins 86 132 IPR012340 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01681 Cla08g01366 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01681 Cla-Chr5:28466870 Cla05g02413 Cla-Chr5:35646053 3.61E-105 dispersed
Cla05g01681 Cla-Chr5:28466870 Cla06g01235 Cla-Chr6:25603481 1.72E-105 wgd
Cla05g01681 Cla-Chr5:28466870 Cla08g01366 Cla-Chr8:26550907 8.79E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01681 K03263 K02180 fve:101296375 310.071