Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01681 | ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAGCAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATCGATATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAAAGCACATATCGACCCTTATTATGGCCATGGTCAGATTCTCCATCCACTTGAGATAAGGGAACCTGATTCCTTCTGTTCCCATATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG | 570 | 46.84 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQVKAHIDPYYGHGQILHPLEIREPDSFCSHIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28466870 | 28469767 | - | ClCG05G016320.2 | Cla05g01681 | 273171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01681 | 189 | PANTHER | BNAA07G09420D PROTEIN | 1 | 123 | - | - | |
Cla05g01681 | 189 | PIRSF | Transl_init_eIF5A | 1 | 141 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cla05g01681 | 189 | PIRSF | Transl_init_eIF5A | 134 | 186 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cla05g01681 | 189 | Gene3D | - | 86 | 133 | IPR012340 | - | |
Cla05g01681 | 189 | PANTHER | BNAA07G09420D PROTEIN | 150 | 185 | - | - | |
Cla05g01681 | 189 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 150 | 185 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cla05g01681 | 189 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 123 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cla05g01681 | 189 | CDD | S1_eIF5A | 86 | 185 | - | - | |
Cla05g01681 | 189 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Cla05g01681 | 189 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cla05g01681 | 189 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 121 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cla05g01681 | 189 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Cla05g01681 | 189 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cla05g01681 | 189 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 154 | 183 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cla05g01681 | 189 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 131 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cla05g01681 | 189 | SUPERFAMILY | Nucleic acid-binding proteins | 137 | 185 | IPR012340 | - | |
Cla05g01681 | 189 | Gene3D | - | 137 | 187 | IPR012340 | - | |
Cla05g01681 | 189 | SMART | eIF_5a_2 | 85 | 183 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cla05g01681 | 189 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 132 | IPR012340 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01681 | Cla08g01366 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01681 | Cla-Chr5:28466870 | Cla05g02413 | Cla-Chr5:35646053 | 3.61E-105 | dispersed | |
Cla05g01681 | Cla-Chr5:28466870 | Cla06g01235 | Cla-Chr6:25603481 | 1.72E-105 | wgd | |
Cla05g01681 | Cla-Chr5:28466870 | Cla08g01366 | Cla-Chr8:26550907 | 8.79E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01681 | K03263 | K02180 | fve:101296375 | 310.071 |