Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01683 ATGGCTTTATTTCGCAAATTCTTTTATCGAAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGATACTGCAAATTCAGGTCTTAACTCCCCAAAGCACTCTGTGCGCTACATTGATAAACCAGTGAATGTATCTGCAGTTTTCGACTGTTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGGCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAATCATAGCCTCGTTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACTATGGAGATGATCCACCACTTTTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGCCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGCCTCAGAATGGCCTCCTCTTGACAGGGCTCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGAATATACGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGGCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTAATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTTTCAGAGATGGATGCTTCCGCATCACTTATTTCAGTTGAGTTGCCAAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTCGACTTATCTGTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGACAAAAAAATCTCAGCCTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGAGATCAAAGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAAAGAATACCTCAACCTTCATTGTCTACGCCGGCCTCCTTCCGTAGTTCTATGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACAAGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTGCTTTCTTGAGTTCAAGTGGTCTAGATTCACTTAAAGATATTCAACCTTGTATGCTTCCTATTTTGCCTCTCCCGCTAGCAATAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACTGCGTCAACTTCAACCTCTCCCGATCCATTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCAATTTCTCAACCTCCTCAAGCCACATCACGGGTGAGAAGTCAATTATCACCGTCTTCATTACAACCAACTTCTACCTCTTTTCCTGAGGAGTCCCCACCCTCCTTCAATGAGAGCGAAGCTTCAAGAACCTCTTCCTCTTGTTTGTTAATATCATCTCCATCTTCTTGTACTAAGGAATCATTTTCCATCTCCACCCCTCCCCCTCCCCCTCCCCCCCCTCCTCCTCTTCCCCATCTTGATTCACCTTTGGCTTTAGTAACTTCTCCGTCTTCTAGTAGGGAAAACAGTATTTTCCCATCCTCACCACAACCTCCTTCTACAACACTACTGTTATCCTCTACAAATACATCAATTCCATCTGTTCCTCAATTTTCTTCATCTGATGATTGTCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGACGAGTGTCTCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGTTGTAGCCCTAACTTGGGCGCTAGTGTTGCCTCGCCAACACCAGTGCCCCCACCCCCACCTCCACCTCCTTCATGGAAGGATGCTACAGACACATTCATGCTTGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGACTCTAGTATCACGCCTTTAGGGCCACCACCGCCACCACCACCTCCTCCTAGTCATGCACCACAAGATTTTGCCACTGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTCCCCCACCTCCCCCACCTCCTCCATCTCATTCTTCTCTAGATCCTAATACTGTATCTTCAGTACCGCCGCCGCCACTCCCTCCTAGTCTTGCACCAAATGTTTCTACAACAACTGTTAACTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGTCCCACCTTATGTCCAGGTGCTGTAACGTCAGCTCCTCCTGCTCCGCCTCCTCCAGGTTTCTCAATGAAGGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGTGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCCAAGGGACGGGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCCGGAGGTTCGGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCGGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAGATGGAATTACTTAAGGGGTACAATGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTGTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGGCAAGTGGTATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACGATCCTTTCATTGGGTAATGCTTTGAACCACGGAACGGCCAGAGGTTCTGCTATTGGATTTCGACTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCAAAGGACCTTGTTAGTTTGGAAGCTTCTACAAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTCGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCAGGAACTTTTTGCCGGACTTTAAAAGACTTTCTTTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCATTGGCTCTCTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTTGTACGAGCGCATGAAGAAAACTGTAAGCAACTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAACTCAATACCACAAAGAAGGAGTCAGGATTCTTGATGCAGACTCCGACCTAG 4362 44.06 MALFRKFFYRKPPDGLLEISERVYDTANSGLNSPKHSVRYIDKPVNVSAVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGENHSLVTNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLISVELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSVEKLILESETSEDNIGSPRLKIQTKKSQPSSELSQAAGSERSKIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSMQGSPRPILRYHSAPSALGITALLQDHSNFSGKEVIHPATISSPSSAFLSSSGLDSLKDIQPCMLPILPLPLAIEPRSTSENSSTTASTSTSPDPLSLHQLSLKPIKSSISQPPQATSRVRSQLSPSSLQPTSTSFPEESPPSFNESEASRTSSSCLLISSPSSCTKESFSISTPPPPPPPPPPLPHLDSPLALVTSPSSSRENSIFPSSPQPPSTTLLLSSTNTSIPSVPQFSSSDDCLVSSQSPKKNLTSVSPPPPPPPPPPPPPPCCSPNLGASVASPTPVPPPPPPPPSWKDATDTFMLDPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPPSHAPQDFATVVRNLMAVSGPPPPPPPPPPPSHSSLDPNTVSSVPPPPLPPSLAPNVSTTTVNLTHVSGPPPPPPPPFANSGPTLCPGAVTSAPPAPPPPGFSMKGSATHAPPAPPPPGLSGNKLSNVNGTSSQSHVGINNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYNGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQACDLRNSLNTINSASEEASGIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSGTFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKLNTTKKESGFLMQTPT 1453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28487074 28501201 + ClCG05G016340.1 Cla05g01683 273173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01683 1453 MobiDBLite consensus disorder prediction 822 837 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 1084 1102 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 928 943 - -
Cla05g01683 1453 SUPERFAMILY Formin homology 2 domain (FH2 domain) 956 1428 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 1084 1106 - -
Cla05g01683 1453 Gene3D - 221 366 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 771 792 - -
Cla05g01683 1453 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 212 IPR029021 -
Cla05g01683 1453 SMART PTEN_C2_2 222 362 IPR014020 -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 879 915 - -
Cla05g01683 1453 Gene3D Formin, FH2 domain 1024 1419 IPR042201 -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 983 1011 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 850 866 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 692 709 - -
Cla05g01683 1453 ProSiteProfiles C2 tensin-type domain profile. 224 363 IPR014020 -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 713 770 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 1025 1039 - -
Cla05g01683 1453 Coils Coil 1409 1444 - -
Cla05g01683 1453 SMART it6_source 695 1453 IPR015425 -
Cla05g01683 1453 Pfam C2 domain of PTEN tumour-suppressor protein 225 362 IPR014020 -
Cla05g01683 1453 PANTHER FORMIN-J 845 1445 - -
Cla05g01683 1453 PANTHER FORMIN-J 1 770 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 462 481 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 799 815 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 596 691 - -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 596 1045 - -
Cla05g01683 1453 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1030 1434 IPR015425 -
Cla05g01683 1453 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 226 363 IPR035892 -
Cla05g01683 1453 MobiDBLite consensus disorder prediction 462 486 - -
Cla05g01683 1453 Pfam Formin Homology 2 Domain 1032 1408 IPR015425 -
Cla05g01683 1453 Gene3D Protein tyrosine phosphatase superfamily 31 216 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01683 - - - csv:101214019 2129.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01683 Cla-Chr5:28487074 Cla06g01570 Cla-Chr6:29256796 2.89E-20 dispersed
Cla05g01683 Cla-Chr5:28487074 Cla06g01227 Cla-Chr6:25525775 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00231 . 181 996 FH2 protein (formin) Gene Family AT3G25500 50.1 5.5e-181 632.1
Cla11g00087 . 468 934 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-160 562.8
Cla03g01635 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.2e-104 377.1
Cla07g00231 . 588 1013 FH2 protein (formin) Gene Family AT2G43800 56.5 5.6e-126 449.1
Cla02g00812 CCT 441 933 FH2 protein (formin) Gene Family AT5G54650 59.2 4.9e-154 542.3
Cla11g00087 . 481 916 FH2 protein (formin) Gene Family AT5G67470 59.3 3.7e-125 446.4
Cla07g00231 . 580 1013 FH2 protein (formin) Gene Family AT5G67470 55.3 1.4e-121 434.5
Cla03g01635 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.4e-105 378.6
Cla05g02507 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.6e-126 448.7
Cla02g01189 . 730 1033 FH2 protein (formin) Gene Family AT5G48360 52.3 5.7e-74 276.2
Cla07g00225 . 1 1476 FH2 protein (formin) Gene Family AT1G31810 59.8 0.0e+00 1153.7
Cla06g01227 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.5e-241 833.6
Cla06g01570 CCT 1064 1388 FH2 protein (formin) Gene Family AT5G07650 74.2 9.7e-130 461.5
Cla04g01181 CCT 980 1304 FH2 protein (formin) Gene Family AT5G07650 67.4 9.4e-117 418.3
Cla06g01227 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cla05g01683 . 1112 1437 FH2 protein (formin) Gene Family AT5G07650 64.4 1.6e-108 391.0
Cla07g00225 . 1131 1473 FH2 protein (formin) Gene Family AT5G07650 57.7 1.3e-105 381.3
Cla06g01570 CCT 909 1381 FH2 protein (formin) Gene Family AT5G07770 56.8 2.1e-129 459.9
Cla04g01181 CCT 903 1304 FH2 protein (formin) Gene Family AT5G07770 61.0 2.4e-125 446.4
Cla05g01683 . 1036 1429 FH2 protein (formin) Gene Family AT5G07770 59.0 5.4e-117 418.7
Cla06g01227 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.5e-116 415.6
Cla07g00225 . 1067 1467 FH2 protein (formin) Gene Family AT5G07770 53.7 1.0e-112 404.4
Cla05g01683 . 1028 1437 FH2 protein (formin) Gene Family AT3G32400 75.6 5.6e-168 587.8
Cla06g01227 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.9e-148 522.3
Cla07g00225 . 1067 1472 FH2 protein (formin) Gene Family AT3G32400 63.7 3.5e-138 488.8
Cla06g01570 CCT 909 1388 FH2 protein (formin) Gene Family AT3G32400 54.2 5.5e-131 464.9
Cla04g01181 CCT 873 1307 FH2 protein (formin) Gene Family AT3G32400 56.4 5.1e-129 458.4
Cla05g01683 . 1 1437 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1137.5
Cla06g01227 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.1e-290 995.7
Cla06g01570 CCT 910 1388 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-112 402.9
Cla04g01181 CCT 904 1307 FH2 protein (formin) Gene Family AT5G07780 56.2 1.7e-110 396.7
Cla05g01683 . 1037 1430 FH2 protein (formin) Gene Family AT5G07780 53.8 1.5e-101 367.1
Cla06g01227 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.9e-101 366.7
Cla07g00225 . 1068 1468 FH2 protein (formin) Gene Family AT5G07780 50.6 3.0e-99 359.4
Cla06g01570 CCT 1067 1395 FH2 protein (formin) Gene Family AT5G07760 74.3 9.9e-128 454.9
Cla04g01181 CCT 979 1307 FH2 protein (formin) Gene Family AT5G07760 66.7 2.1e-114 410.6
Cla06g01227 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.5e-110 396.0
Cla05g01683 . 1111 1446 FH2 protein (formin) Gene Family AT5G07760 63.4 8.7e-108 388.7
Cla07g00225 . 1141 1473 FH2 protein (formin) Gene Family AT5G07760 58.1 1.4e-102 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42