Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01685 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTTGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTCGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTTCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAGCAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTTAATGCCTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTTTCCAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAATGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA 1332 46.85 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPAEGRKGMLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28525381 28526712 - ClCG05G016360.1 Cla05g01685 273175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01685 443 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Cla05g01685 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cla05g01685 443 PANTHER - 1 431 - -
Cla05g01685 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01685 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
Cla05g01685 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 431 - -
Cla05g01685 443 Coils Coil 39 59 - -
Cla05g01685 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Cla05g01685 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01685 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cla05g01685 443 CDD CIPK_C 302 416 - -
Cla05g01685 443 CDD STKc_SnRK3 10 264 - -
Cla05g01685 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cla05g01685 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01685 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cla05g01685 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01685 Cla-Chr5:28525381 Cla03g00613 Cla-Chr3:7315854 4.17E-162 dispersed
Cla10g01232 Cla-Chr10:27067368 Cla05g01685 Cla-Chr5:28525381 0 transposed
Cla05g01685 Cla-Chr5:28525381 Cla06g01224 Cla-Chr6:25477279 2.07E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80574 PF00069 Pkinase 1.30E-74 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01685 - - csv:101213773 833.943