Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01695 ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAACTGGCGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAACGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTTCCGGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAATGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATCTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACAAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAACGCTTGGAAAATCAGAACATAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTTGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACATGCATGTGA 2070 42.03 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSETGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNIIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28690664 28696043 - ClCG05G016480.1 Cla05g01695 273185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01695 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Cla05g01695 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cla05g01695 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cla05g01695 689 MobiDBLite consensus disorder prediction 437 457 - -
Cla05g01695 689 MobiDBLite consensus disorder prediction 141 180 - -
Cla05g01695 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Cla05g01695 689 CDD REC_typeB_ARR-like 20 134 - -
Cla05g01695 689 Gene3D - 193 256 - -
Cla05g01695 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Cla05g01695 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cla05g01695 689 MobiDBLite consensus disorder prediction 432 457 - -
Cla05g01695 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cla05g01695 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cla05g01695 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cla05g01695 689 MobiDBLite consensus disorder prediction 141 196 - -
Cla05g01695 689 Gene3D - 17 152 - -
Cla05g01695 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Cla05g01695 689 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00679 Cla-Chr5:6321293 Cla05g01695 Cla-Chr5:28690664 1.45E-111 dispersed
Cla05g01695 Cla-Chr5:28690664 Cla06g00448 Cla-Chr6:5465586 1.46E-109 dispersed
Cla10g01569 Cla-Chr10:31101821 Cla05g01695 Cla-Chr5:28690664 7.86E-25 dispersed
Cla11g00324 Cla-Chr11:3670474 Cla05g01695 Cla-Chr5:28690664 1.68E-137 wgd
Cla05g01695 Cla-Chr5:28690664 Cla06g01213 Cla-Chr6:25304932 2.46E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61107 PF00072 Response_reg 8.90E-23 CL0304 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01695 - K14491 csv:101215220 1269.99