Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01700 ATGGAAGTTGTGCTTCTTGGTCTTGAAATACCATATCTTAGTGCAACTGGTGCACTTATGTATCTTCCTAATAATACGAGATCAAATATTGCATTTTCAGTAAATTTATTAGCTAGATACAATTCTTCTCCAGCAGAAAGGCATTGGAATAGAATTAAGTATATACTCCGTTATCTCCGAGGAACAATCGATATGAGTTTGTTTTATTCAAATAAATCGAAATTTGATCTACTTGGTTATGCAAATTCTAGATACTTATCTGATTCACACAAAGCTAGGTCTCAAACAGGCATTTTCACAAACACCTTGTGGATTACAAAGAGTTATGCCATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATACAATCCTCGAATTCGAGGATTTTATCGGCTAACTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCTCCGGTGTGGCCAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCATGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 894 41.61 MEVVLLGLEIPYLSATGALMYLPNNTRSNIAFSVNLLARYNSSPAERHWNRIKYILRYLRGTIDMSLFYSNKSKFDLLGYANSRYLSDSHKARSQTGIFTNTLWITKSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGSGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28752470 28755152 - ClCG05G016530.2 Cla05g01700 273190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01700 297 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Cla05g01700 297 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Cla05g01700 297 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Cla05g01700 297 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Cla05g01700 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 111 296 - -
Cla05g01700 297 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Cla05g01700 297 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Cla05g01700 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 111 296 - -
Cla05g01700 297 CDD AP2 116 176 IPR001471 GO:0003700|GO:0006355
Cla05g01700 297 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01700 Cla-Chr5:28752470 Cla07g01182 Cla-Chr7:28806666 1.88E-50 dispersed
Cla01g00843 Cla-Chr1:10215573 Cla05g01700 Cla-Chr5:28752470 3.42E-06 transposed
Cla02g01767 Cla-Chr2:32635198 Cla05g01700 Cla-Chr5:28752470 4.02E-19 transposed
Cla07g00473 Cla-Chr7:6665718 Cla05g01700 Cla-Chr5:28752470 6.02E-13 transposed
Cla10g00872 Cla-Chr10:19988621 Cla05g01700 Cla-Chr5:28752470 1.59E-39 transposed
Cla05g01700 Cla-Chr5:28752470 Cla08g01357 Cla-Chr8:26394613 1.11E-59 wgd
Cla05g01700 Cla-Chr5:28752470 Cla09g00288 Cla-Chr9:2794654 3.41E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61109 PF00847 AP2 1.50E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01700 - - csv:101216179 317.39