Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01700 | ATGGAAGTTGTGCTTCTTGGTCTTGAAATACCATATCTTAGTGCAACTGGTGCACTTATGTATCTTCCTAATAATACGAGATCAAATATTGCATTTTCAGTAAATTTATTAGCTAGATACAATTCTTCTCCAGCAGAAAGGCATTGGAATAGAATTAAGTATATACTCCGTTATCTCCGAGGAACAATCGATATGAGTTTGTTTTATTCAAATAAATCGAAATTTGATCTACTTGGTTATGCAAATTCTAGATACTTATCTGATTCACACAAAGCTAGGTCTCAAACAGGCATTTTCACAAACACCTTGTGGATTACAAAGAGTTATGCCATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATACAATCCTCGAATTCGAGGATTTTATCGGCTAACTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCTCCGGTGTGGCCAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCATGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA | 894 | 41.61 | MEVVLLGLEIPYLSATGALMYLPNNTRSNIAFSVNLLARYNSSPAERHWNRIKYILRYLRGTIDMSLFYSNKSKFDLLGYANSRYLSDSHKARSQTGIFTNTLWITKSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGSGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28752470 | 28755152 | - | ClCG05G016530.2 | Cla05g01700 | 273190 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01700 | 297 | SMART | rav1_2 | 117 | 180 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | PRINTS | Ethylene responsive element binding protein signature | 118 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | PRINTS | Ethylene responsive element binding protein signature | 140 | 156 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | Gene3D | AP2/ERF domain | 116 | 175 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 111 | 296 | - | - | |
Cla05g01700 | 297 | SUPERFAMILY | DNA-binding domain | 117 | 176 | IPR016177 | GO:0003677 | |
Cla05g01700 | 297 | ProSiteProfiles | AP2/ERF domain profile. | 117 | 174 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 111 | 296 | - | - | |
Cla05g01700 | 297 | CDD | AP2 | 116 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01700 | 297 | Pfam | AP2 domain | 117 | 166 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01700 | Cla-Chr5:28752470 | Cla07g01182 | Cla-Chr7:28806666 | 1.88E-50 | dispersed | |
Cla01g00843 | Cla-Chr1:10215573 | Cla05g01700 | Cla-Chr5:28752470 | 3.42E-06 | transposed | |
Cla02g01767 | Cla-Chr2:32635198 | Cla05g01700 | Cla-Chr5:28752470 | 4.02E-19 | transposed | |
Cla07g00473 | Cla-Chr7:6665718 | Cla05g01700 | Cla-Chr5:28752470 | 6.02E-13 | transposed | |
Cla10g00872 | Cla-Chr10:19988621 | Cla05g01700 | Cla-Chr5:28752470 | 1.59E-39 | transposed | |
Cla05g01700 | Cla-Chr5:28752470 | Cla08g01357 | Cla-Chr8:26394613 | 1.11E-59 | wgd | |
Cla05g01700 | Cla-Chr5:28752470 | Cla09g00288 | Cla-Chr9:2794654 | 3.41E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61109 | PF00847 | AP2 | 1.50E-11 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01700 | - | - | csv:101216179 | 317.39 |