Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01707 | ATGAAAACCTTTCCCCCTTTATCTCTCTCTATTATTTGTTATTACTGCAACAAAGAACTGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCAACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA | 1539 | 49.19 | MKTFPPLSLSIICYYCNKELIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVNSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28846938 | 28852347 | + | ClCG05G016600.2 | Cla05g01707 | 273197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01707 | 512 | MobiDBLite | consensus disorder prediction | 77 | 106 | - | - | |
Cla05g01707 | 512 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 95 | 502 | - | - | |
Cla05g01707 | 512 | MobiDBLite | consensus disorder prediction | 480 | 497 | - | - | |
Cla05g01707 | 512 | SMART | KNOX2_2 | 291 | 346 | IPR005541 | GO:0003677|GO:0005634 | |
Cla05g01707 | 512 | MobiDBLite | consensus disorder prediction | 480 | 512 | - | - | |
Cla05g01707 | 512 | Pfam | KNOX2 domain | 295 | 345 | IPR005541 | GO:0003677|GO:0005634 | |
Cla05g01707 | 512 | MobiDBLite | consensus disorder prediction | 498 | 512 | - | - | |
Cla05g01707 | 512 | SMART | HOX_1 | 425 | 490 | IPR001356 | GO:0003677 | |
Cla05g01707 | 512 | ProSiteProfiles | ELK domain profile. | 403 | 423 | IPR005539 | GO:0003677 | |
Cla05g01707 | 512 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 95 | 502 | - | - | |
Cla05g01707 | 512 | Pfam | ELK domain | 403 | 424 | IPR005539 | GO:0003677 | |
Cla05g01707 | 512 | ProSiteProfiles | 'Homeobox' domain profile. | 423 | 486 | IPR001356 | GO:0003677 | |
Cla05g01707 | 512 | SMART | KNOX1_2 | 234 | 278 | IPR005540 | GO:0003677|GO:0005634 | |
Cla05g01707 | 512 | CDD | homeodomain | 426 | 487 | IPR001356 | GO:0003677 | |
Cla05g01707 | 512 | SMART | ELK_2 | 403 | 424 | IPR005539 | GO:0003677 | |
Cla05g01707 | 512 | Pfam | KNOX1 domain | 236 | 277 | IPR005540 | GO:0003677|GO:0005634 | |
Cla05g01707 | 512 | SUPERFAMILY | Homeodomain-like | 425 | 489 | IPR009057 | - | |
Cla05g01707 | 512 | Pfam | Homeobox KN domain | 443 | 482 | IPR008422 | GO:0003677|GO:0006355 | |
Cla05g01707 | 512 | Gene3D | - | 424 | 485 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01707 | Cla-Chr5:28846938 | Cla05g01810 | Cla-Chr5:30014939 | 2.89E-28 | dispersed | |
Cla01g00313 | Cla-Chr1:3311245 | Cla05g01707 | Cla-Chr5:28846938 | 2.76E-125 | transposed | |
Cla05g01707 | Cla-Chr5:28846938 | Cla08g01353 | Cla-Chr8:26339395 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61110 | PF03791 | KNOX2 | 2.20E-21 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01707 | - | - | bhj:120085761 | 867.07 |