Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01707 ATGAAAACCTTTCCCCCTTTATCTCTCTCTATTATTTGTTATTACTGCAACAAAGAACTGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCAACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1539 49.19 MKTFPPLSLSIICYYCNKELIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVNSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28846938 28852347 + ClCG05G016600.2 Cla05g01707 273197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01707 512 MobiDBLite consensus disorder prediction 77 106 - -
Cla05g01707 512 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 95 502 - -
Cla05g01707 512 MobiDBLite consensus disorder prediction 480 497 - -
Cla05g01707 512 SMART KNOX2_2 291 346 IPR005541 GO:0003677|GO:0005634
Cla05g01707 512 MobiDBLite consensus disorder prediction 480 512 - -
Cla05g01707 512 Pfam KNOX2 domain 295 345 IPR005541 GO:0003677|GO:0005634
Cla05g01707 512 MobiDBLite consensus disorder prediction 498 512 - -
Cla05g01707 512 SMART HOX_1 425 490 IPR001356 GO:0003677
Cla05g01707 512 ProSiteProfiles ELK domain profile. 403 423 IPR005539 GO:0003677
Cla05g01707 512 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 502 - -
Cla05g01707 512 Pfam ELK domain 403 424 IPR005539 GO:0003677
Cla05g01707 512 ProSiteProfiles 'Homeobox' domain profile. 423 486 IPR001356 GO:0003677
Cla05g01707 512 SMART KNOX1_2 234 278 IPR005540 GO:0003677|GO:0005634
Cla05g01707 512 CDD homeodomain 426 487 IPR001356 GO:0003677
Cla05g01707 512 SMART ELK_2 403 424 IPR005539 GO:0003677
Cla05g01707 512 Pfam KNOX1 domain 236 277 IPR005540 GO:0003677|GO:0005634
Cla05g01707 512 SUPERFAMILY Homeodomain-like 425 489 IPR009057 -
Cla05g01707 512 Pfam Homeobox KN domain 443 482 IPR008422 GO:0003677|GO:0006355
Cla05g01707 512 Gene3D - 424 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01707 Cla-Chr5:28846938 Cla05g01810 Cla-Chr5:30014939 2.89E-28 dispersed
Cla01g00313 Cla-Chr1:3311245 Cla05g01707 Cla-Chr5:28846938 2.76E-125 transposed
Cla05g01707 Cla-Chr5:28846938 Cla08g01353 Cla-Chr8:26339395 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61110 PF03791 KNOX2 2.20E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01707 - - bhj:120085761 867.07