Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01721 ATGCAGAAAGAGACGCAAAACCAAAGAAAAGAACCAATTCTTCTTCTTCTTCTTCTTCCAACGTCCAAATTCCGATCATGGAACAAATCTTCACTCACACATTCTTCTATCCGCCATTTCTTCATTGCCTTCCTGTCTTTCTCCGAATCTTTCCTTATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTCCTACTCATTATTGCTCTTGCTCGCGCCGGAAATGTTCGCGCCAAGCATCGCTCCGATTTGGCTACGACTATTGCGGCATTTGCAAGGATGACGGCACAGGACTCGAGAAAAATTCTTCCCAAGGAGTTTTATCCGTCGTGGGTCGTATTTACGCAGCGACAGAAGTTAACTTGGCTCAATCTTCAGCTTGATAAAATCTGGCCATATGTTGACGCGGCAGCATCGGAACTGATAAGGAGCAATGTGGAGCCGGTTCTAGAACAATTTCGACCGGCGATATTATCTTCTTTGAAGTTCTCAAAGTTGACCCTGGGTACTGTTGCTCCACATTTTACAGGAATTGCTGTACTTGAAGACGAGCCTGAATCCGGGGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAAAAGAAAAATCTTGATTTTAAACTTAAGATTGTTGGAGGAGATATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATTCGAGATGCTATCGAAGGTACTATAACGTGGCCTGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGATTTAGAGGCAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGCTGTTTTTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAATTTTTGACGATGAAGGAGTTCAGGCCTCTGAACTAATTGGCTGTGCCCAAGTAGCACTAAAAGACCTCGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGACATCCAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTCGGCACTGATCAGAGCCTCTATATAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAAACGGCTCCGAATGGCTCAGAAGATGCAGATTCTGGAAAACCAAGCTCCCCAAAGAAGAGGGATGTGATTGTAAGAGGAGTGTTATCTGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCTGACCCTTACGTTGTTCTCATTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACCCTGAATCCTGTCTGGAATCAAACATTCGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATGGTAGAGGTCTGGGATCATGATACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACATTGACAAGATCGATATTGGAAGGGGAAATTCAGGACTGTTTTCCACTGGAAGGAGCCAAATCAGGACGGGTTTATCTGCATCTCAAATGGGCAGCTCAGCCAATTTTCCGAGATATTTGA 1866 42.55 MQKETQNQRKEPILLLLLLPTSKFRSWNKSSLTHSSIRHFFIAFLSFSESFLMSFFSGIFLGVVVGVLLIIALARAGNVRAKHRSDLATTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEQFRPAILSSLKFSKLTLGTVAPHFTGIAVLEDEPESGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKNLDFKLKIVGGDISSIPGVSDAIEETIRDAIEGTITWPVRMIVPIIAGDYSDLEAKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFLRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRIFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLVKDLDIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKTAPNGSEDADSGKPSSPKKRDVIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVEVWDHDTFGKDKLGRVIMTLTRSILEGEIQDCFPLEGAKSGRVYLHLKWAAQPIFRDI 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29047003 29051402 + ClCG05G016730.1 Cla05g01721 273211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01721 621 CDD C2 318 420 - -
Cla05g01721 621 Pfam C2 domain 316 420 IPR000008 -
Cla05g01721 621 Pfam C2 domain 496 594 IPR000008 -
Cla05g01721 621 PANTHER SYNAPTOTAGMIN-4 53 620 - -
Cla05g01721 621 Gene3D C2 domain 485 614 IPR035892 -
Cla05g01721 621 ProSiteProfiles C2 domain profile. 479 596 IPR000008 -
Cla05g01721 621 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 122 303 IPR039010 -
Cla05g01721 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 314 445 IPR035892 -
Cla05g01721 621 CDD C2 498 598 - -
Cla05g01721 621 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 53 620 IPR045050 GO:0008289
Cla05g01721 621 PRINTS C2 domain signature 539 552 IPR000008 -
Cla05g01721 621 PRINTS C2 domain signature 561 569 IPR000008 -
Cla05g01721 621 PRINTS C2 domain signature 513 525 IPR000008 -
Cla05g01721 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 495 612 IPR035892 -
Cla05g01721 621 ProSiteProfiles C2 domain profile. 297 418 IPR000008 -
Cla05g01721 621 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 119 303 IPR031468 GO:0008289
Cla05g01721 621 Gene3D C2 domain 312 452 IPR035892 -
Cla05g01721 621 SMART C2_3c 317 417 IPR000008 -
Cla05g01721 621 SMART C2_3c 497 595 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01721 - - - csv:101210249 1055.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01721 Cla-Chr5:29047003 Cla08g01413 Cla-Chr8:26999547 7.94E-80 dispersed
Cla07g01442 Cla-Chr7:31651660 Cla05g01721 Cla-Chr5:29047003 7.63E-06 dispersed
Cla06g00024 Cla-Chr6:297218 Cla05g01721 Cla-Chr5:29047003 1.05E-12 transposed
Cla11g00305 Cla-Chr11:3549582 Cla05g01721 Cla-Chr5:29047003 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70