Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01726 ATGGAGGAAGTTCGTCTTAATAGCGAGCCTATCTTTGATGACTGTGATGAATATGAGGTGGATGGTGATGGCTCCTTTGTGGACAACGAGGATGAATCTGGGGAAGCACAGTCAAAGAAGAATCCTCCACTGCCAACTGTGGGTTTGGAATTTAATTCTTTCGATGAGGCATATGACTTTTATAATGTTTATGCTAAGGAACTGGGCTTTGGCATCAGGGTCAGTAATTCATGGTTTCGATCTAAGAGAAAAGAACGATATAGAGCTAAACTTAGCTGCAGCAGTGCAGGATTCAAGAAAAAGAGTGAAGCCAATAATCCAAGGCCAGAAACTAGAACTGGTTGTCCTGCAATGATAATTATTAGGCTGATTGACATCAAAAGGTGGAGAATAGTTGAAGTCGAGCTTGAACACAACCATCCAGTGAGTCCACAAATTACTCGATTTTACAAGTCACATAAAAAGATGATCCTTGCCGCAAAGAAAGCACAGACACAGCTGCATCCCGTAACTGAAGTTCATACAATCAAGCTCTATAGAAGAACCATTCTTAACGGTTTTAATGGAAGCTCAAATGCTGACCAAAGGGAGGGTATCAGTTCTGTTGATCACTTGAAACACCTTGAATTTAAAGATGGGGATGGTCATGCATTGTACAATTATTTCTGCCGCATGAAATTGACAAATCCTAATTTTTTTTACTTGATGGATCTTGACAACGATGGGCATTTGAGGAATGTGTTCTGGGCAGATTCCCGGTCCAGGTCTGCGTATTGTTACTTTTGTGATACAATCACTATAGACACAACTTGCTTAACAAACAGATATGAAATTCCTCTGATTTCATTTGTTGGTGTGAACCACCATGGACAATCAGTGTTGCTAGGATGTGGCTTTGTTGGATTTGAATCAGTGGAGTATTTTGTTTGGATTTTGAAGGCGTGGCTTAGATGCATGTTGGGACGCTCTCCACAGGTCATTATTACTGACCAAAATAAAACATTGCTAGCTGCAGTCTCTGAAGTTTTCCCTAAAGCTTGTCACTGTTACTCAATGTGGTATATCATGCAAAGATTACCAGAAAAGTTGGGCGGACTGGAAGGATATGAAATGATAAGAAGCCAATTGAATGAAACCATTTTTAGCTCATTGAAGATAGCTGAATTTGAAACTTCATGGACTAATATGATCAAGCACAATGGGCTTGGAGATAACAAATGGCTCCAATCACTGTATGAGGATCGGACATTATGGGCTCCTGTATACTTAAAAGACATATTTTTCGCAGGACTGGTCCCTATCCGTGCAAATGAGAGCTTCAAAACGTTTTTTGATGGATATGTACATAAGCACACATCTTTTAAGGAATTTGTTGATAAGTATGATCTTGCCCTCCACAGGAAATACCATAAGGAAGCAGTAGCAGATCTGGAGTCAAGAAATTTAAGCGTTGAGTTGAAAACGAGATGTAATTTTGAGTTGCAGCTCTCCAAGATGTACACAAAAGAAATATTTAGCAAGTTCCAATCTGAGGTAGAAGGAATGTACTCTTGCTTCAACACAAGGCAGGTCAATGTAAATGGGCCTATAGTAACTTACGTTGTCAAAGAAAGGATTGAAGTTGAGGGAAACGAGAAAGAGGTAAGATGTTTTGAGGTATTGTATGAGACAACTGAAGTGGACATTCGGTGCATTTGCAGTTTGTTCAACTACAAAGGTTACCTTTGCAGGCATGCGTTAAATGTTCTTAATTATAACGGCGTGGAAGAAATCCCAGCTCGCTACATTCTGCCACGCTGGTGTAAAGATTTTAAGTGCAGGTATCTTTTAGGTCGGAGCTTAAGTAATACTGATGTGTATAGTTCAACTTCAACATACCAATATAGTCATATTCTTAATTTTGCACTTCCAGTTGTAGAAGAAGGTGCACAATCTCAAGAACGTTATAAGCTTGCATTGCAAGAATTGGAGAAGTTGTTACATAAATTAAATCTTGTAGAGGATGATCTAAATAACGATGGATAA 2025 39.16 MEEVRLNSEPIFDDCDEYEVDGDGSFVDNEDESGEAQSKKNPPLPTVGLEFNSFDEAYDFYNVYAKELGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIIIRLIDIKRWRIVEVELEHNHPVSPQITRFYKSHKKMILAAKKAQTQLHPVTEVHTIKLYRRTILNGFNGSSNADQREGISSVDHLKHLEFKDGDGHALYNYFCRMKLTNPNFFYLMDLDNDGHLRNVFWADSRSRSAYCYFCDTITIDTTCLTNRYEIPLISFVGVNHHGQSVLLGCGFVGFESVEYFVWILKAWLRCMLGRSPQVIITDQNKTLLAAVSEVFPKACHCYSMWYIMQRLPEKLGGLEGYEMIRSQLNETIFSSLKIAEFETSWTNMIKHNGLGDNKWLQSLYEDRTLWAPVYLKDIFFAGLVPIRANESFKTFFDGYVHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVELKTRCNFELQLSKMYTKEIFSKFQSEVEGMYSCFNTRQVNVNGPIVTYVVKERIEVEGNEKEVRCFEVLYETTEVDIRCICSLFNYKGYLCRHALNVLNYNGVEEIPARYILPRWCKDFKCRYLLGRSLSNTDVYSSTSTYQYSHILNFALPVVEEGAQSQERYKLALQELEKLLHKLNLVEDDLNNDG 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29086693 29088717 + ClCG05G016770.1 Cla05g01726 273216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01726 674 SMART 26again6 562 589 IPR006564 GO:0008270
Cla05g01726 674 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Cla05g01726 674 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 20 668 - -
Cla05g01726 674 Coils Coil 646 673 - -
Cla05g01726 674 MobiDBLite consensus disorder prediction 1 44 - -
Cla05g01726 674 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
Cla05g01726 674 Pfam MULE transposase domain 265 357 IPR018289 -
Cla05g01726 674 Pfam SWIM zinc finger 559 584 IPR007527 GO:0008270
Cla05g01726 674 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 668 IPR031052 GO:0006355
Cla05g01726 674 MobiDBLite consensus disorder prediction 13 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01726 K17604 ZSWIM3; zinc finger SWIM domain-containing protein 3 - csv:105435026 1287.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01726 Cla-Chr5:29086693 Cla07g01041 Cla-Chr7:26878705 3.14E-134 dispersed
Cla07g01163 Cla-Chr7:28583676 Cla05g01726 Cla-Chr5:29086693 5.17E-37 dispersed
Cla05g01726 Cla-Chr5:29086693 Cla09g00267 Cla-Chr9:2630520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g500 . Blo12g01072 . . . . . . . . Cma01g01512 . . . . . . . . . . . . . Cla05g01726 Cam05g1839 Cec05g1853 Cco05g1910 Clacu05g1827 Cmu05g1710 Cre05g1841 . Cone7ag1692 . . Lsi04g02118 Csa03g04322 Chy04g00378 . . . . . . . . . . Cmo01g01565 . . . . . . Cpe02g00444 . . . . . . . . . . . . . . . . . Cme04g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61111 PF10551 MULE 4.40E-24 CL0219 Cla TF