Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01730 ATGATGCAGAATCGAAGTCCGCCCAAGCATAGACATGATGGAACCTCGCCGTTGCCTCTTGGAATGGACTGGAGTCCTCCTCCTCGAAAATGGAATGGGAAGGACACAGTTTGGCCTCATGACCATCACACAGGATGGAGTTACTGTGTCATAATACCTTCATGGGTTGCCCTCCCTAAAACACGAACTGCAGATCCCATAGTGGGACAGTTCTACAGGGTTCAGGTTGGTGTACAGTCACCTGAAGGGATCACAGCAATTCGGGGAGTATTAAGGCGATTTAATGATTTCATGAATTTATTTTCAGATGTTAAAAAGGCTTTTCCAAAGAAAATTATTCCTCCAGCTCCACCCAAAGGAATCTTACGGATGAAAACCAGAGCACTTTTAGAAGAGAGAAGGCGCTCATTGGAGGAGTGGTTGACGAAGCTGCTGTCTGACATTGATATATCAAGAAGTGTTGCAGTAGCGTCCTTCCTTGAGCTGGAAGCTGCTGCTAGGTCTTCTTTCCAAAATGATAATCGGGGGCCTTCAGGTGAAGACCCTGATTATAACAGCAAAATTTCGGCACATCAATCTCCTCCTAATTCAAGCTCATCTACTGTTGCTGGTGGTTTGTCGCTTACATCAGATTATGGTAGTGATACTGCTTATGAGGCCTCTGAACTTGGTACAGCAAGTCTGGGAAGAGATGATATTTCTGAGATTGCCATAGATGATTTAGCTCTGGATGATGATCTTTCCAGTCCAATTGAAAAACTTGTGAAGTATGGATTGTCCAATATTGATGAGGGACTGTTTATGGGACAGACCATTCTAGAGCAGTTGGAAGGTCTTCCAAAACATAAAGCTCATCCTAGATATAATAACAATTTAAAGGATGGTCACAATGGTAATACTTCCAAGGCATCGTACTTGGATAAAAATGGACTGGTACCGTTTGCAGAGCCTGATCATGGCAAGGTAATTGTCCATGCTCGCAAGCTGTCTGATGAGAGTGTAGCAAGTGATGTAAGTTCTCTGAGAGGTGGAGAGAGTTCAAGCTTTTCACATCAGAATTCAGTAGGCAATGGCTCACTTGACCATTCAGGTGCTGAGGTTTCAAATGCAATTGAATTTCATAGCAACCCTGAATTGCATTTTTCACATGATGCACTCCTCTTCCCAAAGGATCATCGGCATAAAATGAATAGGGTTCTCTCAACAATGCATCAAAGGCTAGTGACAGCAAAAACAGACATGGAGGACCTTATATCAAGATTGAATCAGGAAATAACCGTGAAAGATTACCTTGCAACAATGGTTAAGGATTTGGAAGTAGAACTTGAAACAAATAAGCAGAAAAGTAAAGAAAACCTTCAACAAGCTATTTTGATGGAGAGGGAAAAAGTTACACAAATGCAGTGGGAAATGGAGGAACTTCGTCACAAATCATTGGAAATGGAGTTAAAATTGAAGTCTAAAGAGGGTGAAAATTCATTTTCAGTGCCTACCAAAGAGTTTACCCTCCAGGAGAAAGTCGCCTTGCAAGAAGAGCTTGAATCCACGAAAGAGCAACTAAAGAATGTTTCTAAGCAATTTGAAGAGCTTGAAGCAAAATCAAAAGGAGACATCAGGGTTCTTGTTAAAGAGGTCAAATCTCTTCGGAGTACCCAAGCCAGACTTAAACAAGAGCTTAGTCAAACTCTTCAACAGAAGTCTGAGACTGAGGTAGTACTGCAATCTGCTAATTGTGCTATGATTAAGGGATTCCTTCAACAGGAAAGAGAAATGAGACAGCATCCAAACACCGCTTGGAGAAAGCTGCTGTCTGAATGTAGGAGCCTACATGGTCGGCTTAAAAAATGCAGCATGAATTTTTCAGCAGACGATGGTTACAACCATGATGTGAAATCATCATCCTTATCTAATGCCTTGGATTTGTTGACAACATCTGATGACCAATTAAATTTCCTCCTGGCTGAGGCAAATCTTCTATCCGATGGCAAACAAACTGCTACTTCAATGGCAGATGATGACATTCAGGATGGCGACAACGATTCAGTTAAAGTAGAAGCAGAGTTGAGGATGATACTTAAAGACATGTTCACCGAAAACGCTAGGTTGAGGAAACAGGTCAATTCTTATTTCGGGCATGGTATGAGATTGAGGATGTCAAAGGAAGCTGATGGTGCAGAGGCTTCTTCTTCTTCACAAAATACTAAATGGAAGTATCTTCCAGCTCTTATCTTGATAAGTGGTTTTTGGTGCAGATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAGGAAGAATTAGATACTACTAACAATGATGATGTTGCTGGTGAACCCGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGAGTGCGTAAAACGTCAAAATTTATGACTAAATATGAACGGGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGATTGGGGCGTTGATGAACTGATTGTGGAGGATTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA 2649 42.39 MMQNRSPPKHRHDGTSPLPLGMDWSPPPRKWNGKDTVWPHDHHTGWSYCVIIPSWVALPKTRTADPIVGQFYRVQVGVQSPEGITAIRGVLRRFNDFMNLFSDVKKAFPKKIIPPAPPKGILRMKTRALLEERRRSLEEWLTKLLSDIDISRSVAVASFLELEAAARSSFQNDNRGPSGEDPDYNSKISAHQSPPNSSSSTVAGGLSLTSDYGSDTAYEASELGTASLGRDDISEIAIDDLALDDDLSSPIEKLVKYGLSNIDEGLFMGQTILEQLEGLPKHKAHPRYNNNLKDGHNGNTSKASYLDKNGLVPFAEPDHGKVIVHARKLSDESVASDVSSLRGGESSSFSHQNSVGNGSLDHSGAEVSNAIEFHSNPELHFSHDALLFPKDHRHKMNRVLSTMHQRLVTAKTDMEDLISRLNQEITVKDYLATMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHKSLEMELKLKSKEGENSFSVPTKEFTLQEKVALQEELESTKEQLKNVSKQFEELEAKSKGDIRVLVKEVKSLRSTQARLKQELSQTLQQKSETEVVLQSANCAMIKGFLQQEREMRQHPNTAWRKLLSECRSLHGRLKKCSMNFSADDGYNHDVKSSSLSNALDLLTTSDDQLNFLLAEANLLSDGKQTATSMADDDIQDGDNDSVKVEAELRMILKDMFTENARLRKQVNSYFGHGMRLRMSKEADGAEASSSSQNTKWKYLPALILISGFWCRYEDEPPEPEIEEGAEEELDTTNNDDVAGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29112059 29128785 + ClCG05G016800.1 Cla05g01730 273220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01730 882 Gene3D - 750 873 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 801 856 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 734 IPR044588 GO:0015031
Cla05g01730 882 SMART PX_2 56 163 IPR001683 GO:0035091
Cla05g01730 882 MobiDBLite consensus disorder prediction 756 789 - -
Cla05g01730 882 Coils Coil 499 533 - -
Cla05g01730 882 MobiDBLite consensus disorder prediction 170 205 - -
Cla05g01730 882 MobiDBLite consensus disorder prediction 755 794 - -
Cla05g01730 882 Gene3D - 68 173 IPR036871 GO:0035091
Cla05g01730 882 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 734 - -
Cla05g01730 882 SMART RNA_pol_Rpb6_2 797 850 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 MobiDBLite consensus disorder prediction 1 26 - -
Cla05g01730 882 Pfam RNA polymerase Rpb6 799 850 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 804 818 IPR020708 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 Coils Coil 538 565 - -
Cla05g01730 882 SUPERFAMILY RPB6/omega subunit-like 761 872 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cla05g01730 882 ProSiteProfiles PX domain profile. 50 167 IPR001683 GO:0035091
Cla05g01730 882 SUPERFAMILY PX domain 41 163 IPR036871 GO:0035091
Cla05g01730 882 Pfam PX domain 90 161 IPR001683 GO:0035091
Cla05g01730 882 MobiDBLite consensus disorder prediction 337 361 - -
Cla05g01730 882 Coils Coil 471 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01730 - - - bhj:120085923 1254.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00856 Cla-Chr5:8479093 Cla05g01730 Cla-Chr5:29112059 7.72E-59 transposed
Cla05g01730 Cla-Chr5:29112059 Cla09g00264 Cla-Chr9:2615058 2.61E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39