Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01735 ATGGCCTACGCTTTTCGCTTGGATCCAGCTGCGAGTTGTCGTCTCCTTCACTCTCTTATCCACACTGATACACGAAAGATTCTAATGGAGCTTCAACTTGAGCTAGCGCTTTCTGTACCAGATCCCACCAGAGGTTTCGACCTGAACACGAATGCGTGTGATGGAAAAGATGTGTTTGGTTTAGATCCGAGGAGCTGTCTGTGTGTAGAAAGCACGAGCCATGGTACACACAAGCGTAGCTTTGAAAATGCTTTCTTTAAGAGCAAAGATTCGTTTAAAGAGGTCTCTTTGCTGCTGTGGAATGGTCACCCAAACAAGGAAGATGATGACAGGAAGGACACCAACCAGAGAAGCTCTTGTCCCATACACATTAATGCTGGAGAGGAGAACAAAGTTGTGGGGTGGCCACCCATTAAATCATGGAGGAAAAAGCACCTTCATGGGCTGCAACAGGACGGCCTAGGTTCTGATAATTATTGGATGGAAGAAGATGAAGATGATGGAATTGTTTTTAACCCAAAATATGTGAAGGTGAAGATGGAGGGGGTGCCAATAGCAAGGAAGATTGATGTGGGGCTATATAACTCATATCAGACCCTGAAAACTGCCTTGATCAACATGTTTTCCAATTCCTGCTATCAGAAGTGTGGGAATAGTAATGCCAGCTTAACTCTCACCTATCAGGACAAAGAAGGAGATTGGCTGCTTGCAGGAGATCTTCCATGGCAGATTGGTTTCATTGCACTCCAACTCCCCCACCTAGATCCACCCGTTTCCCACTGCAAAACACCGACTCCGATAACATCGCTCCGAATCTCTCACTCGTTCTTCTGCCGAGTCGCTTTTTCCCTCTCTTCTTCCTTCCTTTCTCTCTCGTCTCATTCCGTTTTCTCCTCCTTTTTTCTACCATTTTTCCTTCCACAACCTCCGTCAATTCCGCCGCCGTCGCGCCGATCTGAGGGATTTCGTTGCAGATCCAGGGTTTTCAGCCTCCAGTGCTGCGGGGAGTTTATTGAGGGTTTTGTTGAGACTGTAGAGATGGCGCCTAGTACGATCCGGAAGGCGATCGGGGCCGTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATATGGCGCCGGACCTCGAGGTAGCGATCGTGAAGGCGACGAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCAGGGAGATTTTGAGCCTCACATCATATTCTCGTGGATATGTGAGTGCGTGTGTGTCGGCAATTTCGAAGCGTCTGGCGAAGACGAGGGACTGGATTGTGGCGCTCAAGGCACTCATACTTGTGCACAGATTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGCACGAGGCTGTTGAATATGTCTGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAAAGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGTAGTGCAAGGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCACCTCCGAGGCCCTACGATAACGGTTACAGTGAGCATAGAGGAGAAAGAGAGTATGGAAATTATGGTGGGATGAGGAGGTCGAGATCTTATGGTGATGTGGGGGAATCTGTGGGGAGGGATGGGCAGGGGCGTAACAACAAGGGGCCTGTGACCCCGTTGAGGGAAATGGCGATTGAGAGAGTTTTCGGGAAGATGGGACATTTGCAGAGACTGTTGGATAGATTCTTGTCGTGTCGTCCAACGGGGTTGGCGAAGAACAGTAGGATGATTTTGTATGCTTTGTATCCTCTAGTGAGGGAGAGTTTTCAATTGTATGCAGATATTTGTGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTACTCTGACTGTATGAAGGCATTTGATGCATATGGTAGTGCAGCTAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGATACAGGAGTTGCTAGATCCTCTGAGTATCCAGAGGTGCAAAGAATCACCAGCAAGTTACTGGAGACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCGAAGAGTCCTGAGAGGGAGCCGCCTCCGCCTGCTCCTGAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAAGCTCTTCCTCCACCTGAAAATTACACTCCACCTCCGCCTGAGCCTGAGCCCCAGCCTGCGCCCAAACCTCAACCACAAGTCACGGAAGACTTGGTCAATCTGAGAGATGATGCAGTCAGTGCAGATGATCAAGGCAATAAACTGGCATTGGCTCTATTTGCTGGTCCAGCAGCTAATGGTGCAAATGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCTGATTGGGAGTTGGCTTTGGTTGAGACAGCAAGCAATTTATCGAGGCAGAAGGCAGCACTTGGCGGTGGACTCGACCCATTGTTGTTAAATGGCATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACTGCACAGCTGAGCGGTGGAAGCGCTAGTAGTGTAGCATTGCCCGGCCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCAGATGGAACTGTTCAGGCAGTGAATCAGGATCCTTTCGCAGCATCATTAAGTGTGCCACCTCCTTCTTATGTGCAGATGGTGGAGATGGAGAAGAAACAGCATCTGCTGATGCAGGAACAGCAGTTATGGCAGCAATATGCAAGAGATGGGATGCAGGGGCAGAGCAGTTTGAACAAAATCAGTAACCCCCCAGGTTACTACAACGCAGCCATGGCACCAATGGCTCCGATGCCCTATGGAATGCCTCCAATGAACGGCATGGGCGGGTATTACTACGTTCCTCAATGA 2994 48.76 MAYAFRLDPAASCRLLHSLIHTDTRKILMELQLELALSVPDPTRGFDLNTNACDGKDVFGLDPRSCLCVESTSHGTHKRSFENAFFKSKDSFKEVSLLLWNGHPNKEDDDRKDTNQRSSCPIHINAGEENKVVGWPPIKSWRKKHLHGLQQDGLGSDNYWMEEDEDDGIVFNPKYVKVKMEGVPIARKIDVGLYNSYQTLKTALINMFSNSCYQKCGNSNASLTLTYQDKEGDWLLAGDLPWQIGFIALQLPHLDPPVSHCKTPTPITSLRISHSFFCRVAFSLSSSFLSLSSHSVFSSFFLPFFLPQPPSIPPPSRRSEGFRCRSRVFSLQCCGEFIEGFVETVEMAPSTIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNSRGDDRFDGRDDFRSPPPRPYDNGYSEHRGEREYGNYGGMRRSRSYGDVGESVGRDGQGRNNKGPVTPLREMAIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTEDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLMQEQQLWQQYARDGMQGQSSLNKISNPPGYYNAAMAPMAPMPYGMPPMNGMGGYYYVPQ 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29164913 29180628 + ClCG05G016850.2 Cla05g01735 273225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01735 997 PANTHER CLATHRIN ASSEMBLY PROTEIN 351 973 IPR045192 GO:0048268|GO:0072583
Cla05g01735 997 MobiDBLite consensus disorder prediction 707 765 - -
Cla05g01735 997 MobiDBLite consensus disorder prediction 743 763 - -
Cla05g01735 997 ProSiteProfiles PB1 domain profile. 173 259 IPR000270 GO:0005515
Cla05g01735 997 PANTHER - 351 973 - -
Cla05g01735 997 SUPERFAMILY ENTH/VHS domain 376 497 IPR008942 -
Cla05g01735 997 MobiDBLite consensus disorder prediction 506 528 - -
Cla05g01735 997 ProSiteProfiles ENTH domain profile. 370 506 IPR013809 -
Cla05g01735 997 MobiDBLite consensus disorder prediction 506 548 - -
Cla05g01735 997 SUPERFAMILY GAT-like domain 579 709 - -
Cla05g01735 997 Gene3D ANTH domain 571 716 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cla05g01735 997 MobiDBLite consensus disorder prediction 707 726 - -
Cla05g01735 997 MobiDBLite consensus disorder prediction 870 889 - -
Cla05g01735 997 CDD ANTH_N_AP180_plant 378 498 - -
Cla05g01735 997 Gene3D - 171 249 - -
Cla05g01735 997 SMART enth_2 376 506 IPR013809 -
Cla05g01735 997 Pfam ANTH domain 377 709 IPR011417 GO:0005543
Cla05g01735 997 Pfam AUX/IAA family 74 244 IPR033389 -
Cla05g01735 997 SUPERFAMILY CAD & PB1 domains 172 244 - -
Cla05g01735 997 Gene3D - 348 501 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01735 - - - csv:101207892 1099.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01735 Cla-Chr5:29164913 Cla11g01149 Cla-Chr11:23948453 2.12E-27 dispersed
Cla06g01134 Cla-Chr6:24256449 Cla05g01735 Cla-Chr5:29164913 5.00E-32 transposed
Cla06g01148 Cla-Chr6:24494958 Cla05g01735 Cla-Chr5:29164913 3.59E-58 transposed
Cla07g00570 Cla-Chr7:9682631 Cla05g01735 Cla-Chr5:29164913 2.70E-39 transposed
Cla09g01048 Cla-Chr9:11131438 Cla05g01735 Cla-Chr5:29164913 6.45E-86 transposed
Cla09g01293 Cla-Chr9:19707467 Cla05g01735 Cla-Chr5:29164913 1.37E-156 transposed
Cla10g00798 Cla-Chr10:17700724 Cla05g01735 Cla-Chr5:29164913 7.66E-17 transposed
Cla05g01735 Cla-Chr5:29164913 Cla06g01131 Cla-Chr6:24200303 0 wgd
Cla05g01735 Cla-Chr5:29164913 Cla08g01340 Cla-Chr8:26237621 5.21E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61112 PF07651 ANTH 2.90E-84 CL0009 Cla TR