Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01741 ATGTGCCATTGGTTGGAGAATCCTCTGTTACCTCCCATTTTATGTCTGCTGCCCATAACCTGTTTGTTGATTTGCCTGAAAGAAACTAGGCGCCTATGGCGGCGTATAGTTCTGCAGATTTGTACACCAAATTGTTGTATGTTTTTGCGTTATCTGGCTTGTGTTTGTTGGATCAATAAGGCTCTGAAACCCCATCTTTTTTCTGGTATCCATAATGTGTTTGTTGATTTGCCTGAAAGAAGATGGGAGGCCATGGCATGCAAATATCTGCAGATTTGTGAAGTGTATTATTTCTTACAGACATTGTGTATTTCTCTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTTCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATGCCGTCCCCGTCCCTGTCGCCTGAATTGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 813 45.63 MCHWLENPLLPPILCLLPITCLLICLKETRRLWRRIVLQICTPNCCMFLRYLACVCWINKALKPHLFSGIHNVFVDLPERRWEAMACKYLQICEVYYFLQTLCISLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSSMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEMPSPSLSPELTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29243958 29245428 + ClCG05G016920.2 Cla05g01741 273231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01741 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 106 268 - -
Cla05g01741 270 Gene3D AP2/ERF domain 67 145 IPR036955 GO:0003700|GO:0006355
Cla05g01741 270 ProSiteProfiles AP2/ERF domain profile. 66 143 IPR001471 GO:0003700|GO:0006355
Cla05g01741 270 CDD AP2 107 145 IPR001471 GO:0003700|GO:0006355
Cla05g01741 270 MobiDBLite consensus disorder prediction 221 243 - -
Cla05g01741 270 MobiDBLite consensus disorder prediction 142 163 - -
Cla05g01741 270 SUPERFAMILY DNA-binding domain 107 145 IPR016177 GO:0003677
Cla05g01741 270 Pfam AP2 domain 108 135 IPR001471 GO:0003700|GO:0006355
Cla05g01741 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 106 268 - -
Cla05g01741 270 SMART rav1_2 100 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01741 Cla-Chr5:29243958 Cla07g01210 Cla-Chr7:29109838 3.26E-46 dispersed
Cla11g00279 Cla-Chr11:3216107 Cla05g01741 Cla-Chr5:29243958 9.28E-53 wgd
Cla05g01741 Cla-Chr5:29243958 Cla06g01112 Cla-Chr6:23898441 5.42E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61113 PF00847 AP2 1.90E-06 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01741 - - bhj:120087118 296.975