Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01741 | ATGTGCCATTGGTTGGAGAATCCTCTGTTACCTCCCATTTTATGTCTGCTGCCCATAACCTGTTTGTTGATTTGCCTGAAAGAAACTAGGCGCCTATGGCGGCGTATAGTTCTGCAGATTTGTACACCAAATTGTTGTATGTTTTTGCGTTATCTGGCTTGTGTTTGTTGGATCAATAAGGCTCTGAAACCCCATCTTTTTTCTGGTATCCATAATGTGTTTGTTGATTTGCCTGAAAGAAGATGGGAGGCCATGGCATGCAAATATCTGCAGATTTGTGAAGTGTATTATTTCTTACAGACATTGTGTATTTCTCTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTTCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATGCCGTCCCCGTCCCTGTCGCCTGAATTGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA | 813 | 45.63 | MCHWLENPLLPPILCLLPITCLLICLKETRRLWRRIVLQICTPNCCMFLRYLACVCWINKALKPHLFSGIHNVFVDLPERRWEAMACKYLQICEVYYFLQTLCISLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSSMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEMPSPSLSPELTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29243958 | 29245428 | + | ClCG05G016920.2 | Cla05g01741 | 273231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01741 | 270 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 106 | 268 | - | - | |
Cla05g01741 | 270 | Gene3D | AP2/ERF domain | 67 | 145 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g01741 | 270 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01741 | 270 | CDD | AP2 | 107 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01741 | 270 | MobiDBLite | consensus disorder prediction | 221 | 243 | - | - | |
Cla05g01741 | 270 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
Cla05g01741 | 270 | SUPERFAMILY | DNA-binding domain | 107 | 145 | IPR016177 | GO:0003677 | |
Cla05g01741 | 270 | Pfam | AP2 domain | 108 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01741 | 270 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 | 106 | 268 | - | - | |
Cla05g01741 | 270 | SMART | rav1_2 | 100 | 149 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01741 | Cla-Chr5:29243958 | Cla07g01210 | Cla-Chr7:29109838 | 3.26E-46 | dispersed | |
Cla11g00279 | Cla-Chr11:3216107 | Cla05g01741 | Cla-Chr5:29243958 | 9.28E-53 | wgd | |
Cla05g01741 | Cla-Chr5:29243958 | Cla06g01112 | Cla-Chr6:23898441 | 5.42E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61113 | PF00847 | AP2 | 1.90E-06 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01741 | - | - | bhj:120087118 | 296.975 |