Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01742 ATGTTGCTGGCTGTGCTGATCGCCAATTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTTTAGTGAAGCTGGGAGCCGATAATCTCAAAGGTGCGAAAAATGAAGAGCTATATGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTCGGCGATGTTGCAGTTTATGTTGTTGGAAAGGACGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTTATAACATCAGCAATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTTGACAAGTACGGAAAGATTTGCTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGAACTCGAAGCTGTAATGGAGAAATTGTTTGGATCAAGATTTTCATGGCGGGTAGGAAGCTTGAGAATACAGCAGACGACGTTTGTATGATATGGAAGCCATTGGAGGATCATGAAGATATGATTGAATCTACTTTGCCAGAGTGGAGAGATGAATACATTTCCTATAAGGTATTAAAGAAGCAATTGAAATTGATGTACCCTGATGAAGATGATGGTGGAAACCCTAAACGCCCAAAGTTAGATGGAGAAGCTTCTATGGAAATCTTTCTGAATCTGCTTGAGGAAGAAGTGGACAAGTTTAACCAATTCTTTGAAGGCAAGGAGGAGTATTATGTTATTAAGTGGAGGTTATTGCAAGAGAAGGTAGCGATGGTTGGAGATTCGAACAAAATGCTGATGGAAGTAGGGAGAGACATTGCAGACTTCCATGGAGAGATGGTTTTGTTAGAGAATTATAGTGCTTTGAATTACACAGGATTGGCCAAGATTCTAAAGAAGTACGACAAGCGAAGCGGCGAGCTCATCCGCGTGCCATTCATCAAGAAGGTGTTACACCAACCGTTCTACTCAACCGACGTGCTGGACAAGCTATTGAAGGAATGTGAGATAATGCTTGATATTCTCTTCTTCAAGAAAGACATCTCATGTGCTGCTGCTAATGCTGAGGCAGTCAATGAGGAAGACCCCAAGACGACTACGACCGAGAGTGAGAGTAAAGAAAAGGTGTTGAACATTCCCGAAGATCTTGCAGAGATCGAGTACATGGAGAGTATGTACCTGAAGCTAACCTTCTCGGCCCTCAATGTTCTCAAGGAGATCAGGGGTGGAAGTTCAACAATTGATGTCTTCTCATGGCTTTGA 1281 43.17 MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRTRSCNGEIVWIKIFMAGRKLENTADDVCMIWKPLEDHEDMIESTLPEWRDEYISYKVLKKQLKLMYPDEDDGGNPKRPKLDGEASMEIFLNLLEEEVDKFNQFFEGKEEYYVIKWRLLQEKVAMVGDSNKMLMEVGRDIADFHGEMVLLENYSALNYTGLAKILKKYDKRSGELIRVPFIKKVLHQPFYSTDVLDKLLKECEIMLDILFFKKDISCAAANAEAVNEEDPKTTTTESESKEKVLNIPEDLAEIEYMESMYLKLTFSALNVLKEIRGGSSTIDVFSWL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29262603 29272494 + ClCG05G016940.2 Cla05g01742 273232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01742 426 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 179 425 IPR031142 GO:0016036
Cla05g01742 426 ProSiteProfiles SPX domain profile. 171 321 IPR004331 -
Cla05g01742 426 CDD SPX_AtSPX1_like 171 310 - -
Cla05g01742 426 Pfam SPX domain 280 322 IPR004331 -
Cla05g01742 426 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 179 425 - -
Cla05g01742 426 SUPERFAMILY SNARE-like 1 143 IPR011012 -
Cla05g01742 426 Gene3D - 1 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01742 - - - bhj:120086831 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01742 Cla-Chr5:29262603 Cla06g00263 Cla-Chr6:3393723 2.22E-46 dispersed
Cla11g00278 Cla-Chr11:3205686 Cla05g01742 Cla-Chr5:29262603 1.00E-61 wgd
Cla05g01742 Cla-Chr5:29262603 Cla06g01111 Cla-Chr6:23868592 7.99E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g476 Blo01g01384 . Bda01g00742 . . Bpe02g00565 . . . . Cma01g01500 . . . . . . . . . . . . . Cla05g01742 Cam05g1855 Cec05g1867 Cco05g1930 Clacu05g1846 Cmu05g1727 Cre05g1859 . . . . Lsi04g02134 Csa03g04340 Chy04g00362 . . . . . . . . . Sed13g2028 Cmo01g01556 . . . . . . Cpe02g00455 Bhi09g02250 Tan01g3654 Cmetu04g0930 . Hepe01g2027 Mch11g0561 . . . . . . . . . . . Cme04g00404
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014025 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24