Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01748 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAACTTGTTCGGATTCGCCACGATTCCGATAGTGGGTCACTTGTGTGGGGTGTTGATCTGTGGACTGGAAGTTCAGATGTGGGGTTTTTTTTCCCCTTGCCTTCTCATTTTGCGATCTTAGGGAATTTGAAACTGATTGCTACTTATCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGCGACGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCCGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGATGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTGACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAATCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTGCTGTGGACTACCCTGTGGACAAAGTCTCTTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCACTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCGAGAGCCCCTGAATTTTATTTTGCTCAAAAAATAGATTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGAGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTATTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCATGATCGATATGCCAATCGCAACATTGTCTTTTTTGATATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTACGATCCAGTTCTGACTGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAATCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCCACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGGTGGATATCAATTTACTGCATGCCTCCACGCCCGGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTGAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTGTTGACTGGAAAGTTCATTATTCCTGAGATAAGCAATTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGCATTCTTGAACTCAGATGGAGTGGTGTTAGTATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCGAAGGCCAGCGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCTACCACTGTCCTGATTATGAATATGGTTGGTATAGTGGCTGGTGTATCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACCATTGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCATTGCTCTGGGTGCGAATCGATCCATTTACCTCAGCCTCGACAAAGGCTGCTAACGGTCAATGTGGTATCAATTGCTAG 3360 44.7 MEANAGLVAGSYKRNELVRIRHDSDSGSLVWGVDLWTGSSDVGFFFPLPSHFAILGNLKLIATYPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29320060 29326421 - ClCG05G017030.1 Cla05g01748 273238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01748 1119 CDD mRING-HC-C4C4_CesA_plant 74 124 - -
Cla05g01748 1119 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 553 690 IPR029044 -
Cla05g01748 1119 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 383 483 IPR029044 -
Cla05g01748 1119 ProSiteProfiles Zinc finger RING-type profile. 76 122 IPR001841 -
Cla05g01748 1119 SUPERFAMILY Nucleotide-diphospho-sugar transferases 413 687 IPR029044 -
Cla05g01748 1119 PANTHER CELLULOSE SYNTHASE 58 1119 - -
Cla05g01748 1119 SUPERFAMILY RING/U-box 63 148 - -
Cla05g01748 1119 MobiDBLite consensus disorder prediction 197 230 - -
Cla05g01748 1119 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 58 1119 - -
Cla05g01748 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
Cla05g01748 1119 Pfam Zinc-binding RING-finger 66 143 IPR027934 -
Cla05g01748 1119 Coils Coil 493 513 - -
Cla05g01748 1119 Pfam Cellulose synthase 395 1110 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01748 Cla-Chr5:29320060 Cla09g00379 Cla-Chr9:3707850 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01748 K10999 - csv:101205724 2180.99