Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01754 ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGAGAGAGCAAGAGCGAGAGATAGAGCAATTATCGAGAGACGATGGCAGCCAATACAGTCTCACCGGCGGAATCCTTCCGCCGCTTGGCGTAAATGGGCGAAATAAAGGAAGAGTCAAACTCCGTAGTCATACAATTTCGCCATTCGATTACAATTACAGACTTTGGGAAACGTTTTTGATATTTCTAGTACTGTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATTCCTTCACCACACGGAGCTCTTGCTGTGATCGATAACGTTGTAAATGGCATATTCGCCATTGATATAGTTTTGACCTTCTTCGTGGCATATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGATATGCGAAAACCTGGTTGATTTTCGACGTTGTGTCAATTATTCCGTCGGAAATGGCTCGTGCTATTCTTCCTCCTTCTCTTCAAACTTATGGCTACTTCAATATGCTCCGTCTATGGCGTCTTCGAAGAGTGAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTATTCACGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTAGCCTTATCCATCGAAGATTTTCATAACGCAAGTTTGCGAGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACAACCACTGGCTATGGCGATTTGCATCCGGTAAATGATCAAGAAATGACTTTTGGCATCTGTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCGAATTTTGCCCATAGAAATCAACTACCTGTTCGTCTTCAAGAACAGATGCTCGCTCATCTATGTTTGAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCGAAAGCCATCAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTCATGGAGTGTCAACAGACTTGATTTTTCAACTGGTTACTGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATATCATCTTGGAGAATGAAGCACCAACAGATTTATATATAGTTGTCACTGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATTGTTGGCGAAGCAAAGATGGGAGATGTCATTGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTGCGCTTGAATCGCTCCTCGTTTTTTAACTTGGTGCAAGCAAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCGTGATGGAGGACATTCTACAAGAAACAGAACAGACATTGACTAAGGCCGGAATGGAAATGCCTCTCAATTTATGCTATGCCGCAGACAGTGGCGATGATATATTGTTGAATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCAATGTCGGGAAGACAGCACTTCATATTGCAGCAGCTAAAGGAAACGAACACTGCGTAGCTCTACTCCTAGAGTATGGGGCAGACCCGAACAGAAGAGACTTTGATGGAAACGTACCCCTGTGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACCGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACACTGCCAAGAAGCAATGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTTCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGAATACATCATCTGTTGTCCATATTCCACAAAATCCTGAATCAAATTACCTACGGAAGTACCAGAGTGAATCAAACATGCCACCACGGTTTTCCCAAGACTCATGCACGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGCGAAGGAGCAATAATTATCAAAACTCACTAGTTGGGTTCATGACAACTAACAATAGAGGTGAAAGGGAAATTTTACAATCTGCATCGCTCAGTTTTAACAATAGCCGAAGCATGAGAACCACTTACCAGGCAAGAATTACTCTCAGTTGCCCTGAAACTGGACAGGCTACTGGAAAGCTAGTGTTTTTACCCAAGTCTATCCAAGAACTACTTGAAATAGGTTCCAAAAAATTTGGGATCTCCGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATACTGACCTTATCAGAGACGGCGATCACCTCATACTTGTTGGTGATGCTGGTGCTCCCCAGTAG 2670 43.6 MSKQKSKKMGLLGRSMCGREQEREIEQLSRDDGSQYSLTGGILPPLGVNGRNKGRVKLRSHTISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLIFDVVSIIPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFTVHFAGCCFYLMAANYPDPKRTWLALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTFGICYLFFILGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAHRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSGIAHHLFYSLVDSAYLFHGVSTDLIFQLVTEMKAEYFPPKEDIILENEAPTDLYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPVMEDILQETEQTLTKAGMEMPLNLCYAADSGDDILLNQLLKRGSNPNEVDGNVGKTALHIAAAKGNEHCVALLLEYGADPNRRDFDGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHGWTPRGLADHQGHEEIKELFSVKQAVNTSSVVHIPQNPESNYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYQNSLVGFMTTNNRGEREILQSASLSFNNSRSMRTTYQARITLSCPETGQATGKLVFLPKSIQELLEIGSKKFGISVAKILTQEGAEVEDTDLIRDGDHLILVGDAGAPQ 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29374564 29382155 + ClCG05G017100.1 Cla05g01754 273244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01754 889 Gene3D - 534 719 IPR036770 -
Cla05g01754 889 MobiDBLite consensus disorder prediction 746 778 - -
Cla05g01754 889 ProSiteProfiles Ankyrin repeat profile. 567 599 IPR002110 GO:0005515
Cla05g01754 889 SUPERFAMILY Ankyrin repeat 516 717 IPR036770 -
Cla05g01754 889 ProSiteProfiles Ankyrin repeat region circular profile. 664 695 - -
Cla05g01754 889 Pfam Ankyrin repeats (3 copies) 639 710 IPR002110 GO:0005515
Cla05g01754 889 Pfam Ankyrin repeats (3 copies) 538 629 IPR002110 GO:0005515
Cla05g01754 889 SUPERFAMILY cAMP-binding domain-like 314 508 IPR018490 -
Cla05g01754 889 PRINTS EAG/ELK/ERG potassium channel family signature 83 90 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01754 889 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01754 889 PRINTS EAG/ELK/ERG potassium channel family signature 117 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01754 889 PRINTS EAG/ELK/ERG potassium channel family signature 256 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01754 889 PRINTS EAG/ELK/ERG potassium channel family signature 300 309 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01754 889 ProSiteProfiles KHA domain profile. 819 889 IPR021789 -
Cla05g01754 889 Pfam Cyclic nucleotide-binding domain 408 492 IPR000595 -
Cla05g01754 889 Pfam KHA, dimerisation domain of potassium ion channel 819 881 IPR021789 -
Cla05g01754 889 SMART cnmp_10 388 505 IPR000595 -
Cla05g01754 889 ProSiteProfiles cAMP/cGMP binding motif profile. 388 490 IPR000595 -
Cla05g01754 889 Gene3D Jelly Rolls 356 528 IPR014710 -
Cla05g01754 889 ProSiteProfiles Ankyrin repeat region circular profile. 567 598 - -
Cla05g01754 889 Pfam Ion transport protein 71 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla05g01754 889 PANTHER POTASSIUM CHANNEL AKT1 6 887 IPR045319 GO:0005249|GO:0006813
Cla05g01754 889 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Cla05g01754 889 SMART ANK_2a 631 660 IPR002110 GO:0005515
Cla05g01754 889 SMART ANK_2a 664 693 IPR002110 GO:0005515
Cla05g01754 889 SMART ANK_2a 567 596 IPR002110 GO:0005515
Cla05g01754 889 SMART ANK_2a 533 562 IPR002110 GO:0005515
Cla05g01754 889 SMART ANK_2a 600 629 IPR002110 GO:0005515
Cla05g01754 889 SUPERFAMILY Voltage-gated potassium channels 65 309 - -
Cla05g01754 889 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 6 887 - -
Cla05g01754 889 Gene3D - 71 309 - -
Cla05g01754 889 ProSiteProfiles Ankyrin repeat region circular profile. 600 631 - -
Cla05g01754 889 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515
Cla05g01754 889 PRINTS Ankyrin repeat signature 568 583 IPR002110 GO:0005515
Cla05g01754 889 PRINTS Ankyrin repeat signature 680 694 IPR002110 GO:0005515
Cla05g01754 889 CDD CAP_ED 388 491 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01646 Cla-Chr2:31248026 Cla05g01754 Cla-Chr5:29374564 3.97E-07 dispersed
Cla05g01754 Cla-Chr5:29374564 Cla06g01070 Cla-Chr6:23198647 0 dispersed
Cla05g01754 Cla-Chr5:29374564 Cla01g02349 Cla-Chr1:37242729 1.13E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01754 K21867 - csv:101217334 1476.07