Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01756 ATGAAGAAGAACAAAATATCTCCCACTATTGTTACATATGGCACCCTTGTAGAAGGCTATTGTCGAATGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGCAAGATCCTTAAATCGATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTATTTCTTCAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGATCACTTGTTGCTGAAGATGTTATGTGAAGAAGAGAGATTAAACATTGCAATTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACAAGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAATATGCATAAATTTGAAGAAGCTTTTGAAGAATTTGAGCACATGATTCGTCAAGGAATTAAAACATCTATTATTCGTAAAGCTGAGGCAATGTCTGAAATATTGAAGGTCTGTAAATACCCTAGGGAGCTTGTCAAACGTAGAAGTCCCTCTGAAAATGTTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAACCAACCCTGTGACTGTTGAACCCATCTACTTAAATTTTGCCGTTGTTGGACATGACGTATGGATGTTGCTGAAACGCAAGGTTTTTCAACAGAATGATGATGAAACACACAATTGTTAG 714 38.94 MKKNKISPTIVTYGTLVEGYCRMGSREALGMMERFTVLEQGPTISTYNSLIKGKILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEDHLLLKMLCEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIKTSIIRKAEAMSEILKVCKYPRELVKRRSPSENVVFSANRLIDDIKKKTNPVTVEPIYLNFAVVGHDVWMLLKRKVFQQNDDETHNC 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29402092 29403682 - ClCG05G017120.1 Cla05g01756 273246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01756 237 Gene3D Tetratricopeptide repeat domain 55 204 IPR011990 GO:0005515
Cla05g01756 237 PANTHER LEAF PROTEIN-LIKE 151 199 - -
Cla05g01756 237 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 150 - -
Cla05g01756 237 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 151 199 - -
Cla05g01756 237 Pfam PPR repeat 6 24 IPR002885 -
Cla05g01756 237 PANTHER LEAF PROTEIN-LIKE 26 150 - -
Cla05g01756 237 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Cla05g01756 237 Gene3D Tetratricopeptide repeat domain 1 54 IPR011990 GO:0005515
Cla05g01756 237 Pfam PPR repeat 122 150 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01756 - - - csv:101216859 243.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01756 Cla-Chr5:29402092 Cla02g00584 Cla-Chr2:6338999 5.92E-07 dispersed
Cla05g01756 Cla-Chr5:29402092 Cla05g01760 Cla-Chr5:29424675 2.67E-104 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016440 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 6