Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01760 ATGCCCATTCATCGTTCTAGTTTTCGAGTTTCAGCTCTGCAATTCTCCTCTTTGTCTGCTCGTTCATGGCTGTCCACGCCAGGAAAGCCCCTCATAAAATGGCCTTCACTACCTGACCAGTTCGACAATGCGGTGCAATCAAATTCTGCTGTGATTTCAAACCCTAACCCTGCCATTGACCTGAAATTTGAAGCATGTTTTGCACCAAATGACTTTTCTACCATTTCTCGCATCCTTTCCGAACGAGGTGTTCGGCCCGGTACAACGCTCGAGGATGCTTTGGACCGGACTGGAATTGTGCCGAGTTCGAGTTTGTTGGAAGCTGTGTTCGATCATTTTGATTCGTCTCCCAAGTTCTTGCACTCGCTGTTTCTTTGGGCTGAGAAGAAATCTGGATTTTGTTCCTCTGCGGCATTGTTCAATTGTCTGATCAACGTGCTTGCTAAATCGAGGGAGTTTGATTCTGCTTGGTCTTTGATTATTCGTCGTCTCCGTGGAGATGAAGAGTCCTCTTTGGTTTCAGTTGACGTGTTCGTGATATTGATTAGGCGGTACGCTCGTGCAGGATATGAAAATTCATATGTGGAAATCACATTCCTTCGCCATTGCATGCTTCAACCTGCAATTCGAACTTTTGAATTTGCTCGCAACCTAGAAACAATTTCAGAGACCAACTCGGAGAGTTTGTTTGAGATTTTACTTGATTCACTCTGCAAAGAAGGCCATGTCAGGGTAGCTTATGAGTATTTCAATAGGAAAATGAATATGGATTCAAGTTTTGAACCATCAATTCGAGCATATAATATACTTCTAAATGGATGGTTTCGATCAAGAAAGCTCAAACATGCTGAGAGGCTTTGGTTTGAGATGAAGAAGAATAAAATATCTCCCTCTGTTGTTACGTATGGCACTCTTGTAGAAGGTTACTGTCGAATGCGTCGTGTTGAAAGAGCCATTGAATTGGTGGATGAGATGAAGGGAGAAGGTATTGAGCCAAATGCAATCATATATAACCCAATAGTTGATGCCCTTGGGGAAGCCGGGAGGTTTAAGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAAGGCAGGAGATCTTTCTGGGGCTAGCAAGATCCTTAAGTCGATGATTGGTAGAGGATTCACTCCAACCCCGACTACCTATAACTACTTCTTTAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCGCCAGATAAACTTACATATCACCTTTTGCTGAAGATGTTATGTGAAGAGGAGAGATTAAACCTTGCCGTTCAAGTTTGCAATGAAATGAAGGCTGGAGGGTTTGACATGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAAGATGCATAAATTTGAAGAAGCTTTTGCAGAATTTGAGCACATGATTCATCGAGGAATTGTTCCTCAATATCTTACTTTCTGCCGATTGCATGATGAATTCATGAAACGTGGATTGACAAAAATGGCATCTAAGCTACAGGAAATGATGTCTTTGGTTCCTCATTCAAAGAAGTTACCCGATACGTATAATCAAACTCCTGATTCTATCCGTGCTAGAAGAACATCTATTATGCGTAAAGCTGAGGCAATGTCTGAAATGTTGAAGGTCTGTAAAGACCCTAGAGAGCTTGTTAAACGCAGAAGTCCATCTGAAAATGCTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAGCCAACCCTGAATCTTTGGAGAAACTCCAACAAATAGATCACGTACAGTTATCTGGTGAGGGGAGAGACACACTTTCGGCTCCTACATCCATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTGTGATCGTTTCCATGAATTCTCGCATCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAATCTATTCAACACCAGCTAGATGCACTGAGATACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCGGGGTTCGATCCTCTTCGAAGGTCAACATATTTTGGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACCTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATTTTGAGCAGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACTGAGAGTTTGCTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTACTAA 2484 42.43 MPIHRSSFRVSALQFSSLSARSWLSTPGKPLIKWPSLPDQFDNAVQSNSAVISNPNPAIDLKFEACFAPNDFSTISRILSERGVRPGTTLEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAEKKSGFCSSAALFNCLINVLAKSREFDSAWSLIIRRLRGDEESSLVSVDVFVILIRRYARAGYENSYVEITFLRHCMLQPAIRTFEFARNLETISETNSESLFEILLDSLCKEGHVRVAYEYFNRKMNMDSSFEPSIRAYNILLNGWFRSRKLKHAERLWFEMKKNKISPSVVTYGTLVEGYCRMRRVERAIELVDEMKGEGIEPNAIIYNPIVDALGEAGRFKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKAGGFDMDLATSTMLVHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSLVPHSKKLPDTYNQTPDSIRARRTSIMRKAEAMSEMLKVCKDPRELVKRRSPSENAVFSANRLIDDIKKKANPESLEKLQQIDHVQLSGEGRDTLSAPTSMSLITNRKFTSSVNKPVIVSMNSRIRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEESIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29424675 29429488 - ClCG05G017170.2 Cla05g01760 273250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cla05g01760 827 Gene3D Tetratricopeptide repeat domain 105 212 IPR011990 GO:0005515
Cla05g01760 827 Gene3D Tetratricopeptide repeat domain 213 361 IPR011990 GO:0005515
Cla05g01760 827 Pfam PPR repeat family 367 412 IPR002885 -
Cla05g01760 827 Pfam PPR repeat family 262 311 IPR002885 -
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cla05g01760 827 Gene3D Tetratricopeptide repeat domain 376 598 IPR011990 GO:0005515
Cla05g01760 827 PANTHER LEAF PROTEIN-LIKE 84 607 - -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 371 403 IPR002885 -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Cla05g01760 827 TIGRFAM PPR: pentatricopeptide repeat domain 230 263 IPR002885 -
Cla05g01760 827 Pfam PPR repeat 140 160 IPR002885 -
Cla05g01760 827 Pfam PPR repeat 441 469 IPR002885 -
Cla05g01760 827 Pfam PPR repeat 336 359 IPR002885 -
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cla05g01760 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cla05g01760 827 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 607 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01760 - - - csv:101216859 1030.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01760 Cla-Chr5:29424675 Cla01g00599 Cla-Chr1:6848342 7.90E-12 dispersed
Cla05g01756 Cla-Chr5:29402092 Cla05g01760 Cla-Chr5:29424675 2.67E-104 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g411 . Blo12g01086 . . . . . . . . . . . . . . . . . . . . . . Cla05g01760 Cam05g1875 Cec05g1887 Cco05g1951 Clacu05g1867 Cmu05g1748 Cre05g1877 Cone4ag1815 Cone7ag1724 . . . . . . . . . . . . . . . . . . . . . . Cpe02g00465 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60