Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01761 | ATGATGTTCAAACTGTACCTTCGTCCCGCCCACGCTCCTTTGACGCTCTCACTCTCTATTTCTCTCTCTAATCTCTCACTCTCTCTGTCCAAAGCTCAGCTTCTCCCGCTCTTTCTCTGTACTTCTGCCGAGAGCTCTGCAGACCGCCATTGGAGGCCGTGGAGCTCTCACTACAGCCAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCGTCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCTCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCACACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGGGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGAATCCAATACCAGTAATGCAAAGTAGTCAATTGGACCCTATAACAAACAAAATGGAATCTTCACTATCAGAAGCTCCAAGAGGGGTTGCAGTTTCTTCCAATGATCCTTCTGTTCATCAATATTTAGTACCTAACAGGCAAATGGAACTAATGGAATCAATTTCTAGTGGCTCTCTAACTCAGAGTGGAATGCTATCACGCATGCAAAGAGGACAGGTTGATGGTAAAGCTGGGAATTTTGGACGGCAACAATTTCAAATACCTGGCAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCGGAAGGGATGCTGTCACTTCCTGTGAAGCGCAAGGCATTGATCGAGCCTTTTAACTCTCTCTCACAGCAGTCTCCATTGCATAATAAGCGTGTTGCACCCATGGAACATCGACCATGGTTGCAACAAGCTTCTGGAATAGCCAAAATACCTCATTTACAAATACCAAACAATGCCCCAGCTCCTGTACCGGTGCATTCCCCTGCAGGAACCAAAAGGAAGGTACAACAAGTGGAATCACATCCAACTAAAGTTGGACATCAACGTTCCACTGCTTCCAAAGGGCAGACTGCTGCACAGACTCCAACTTCCAAAATACAAAATGAGCCAACTGGATCTGTGAGATCGAAGATGAGGGAATCCTTGACTTCTGCATTAGCATTGGTTTCACAGCAGCAAGACAAATCATCTAATGATGAAAAAAGTCCTCCCATCGAGGCTGAAAAATCTGCAACTCCAAAGCAGGAAAATCCTTTGTCATCTGGTCCAGCTATTGGTCATGAATCTGATGACTCGAAGAAAATCTTTTCTGAAAAAGTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCGCTATGTGTAAATGTTAGTGATTTAGAGACACTTAGATATGATGGACGTGTCTTTCAACCTAACAATGTTTTGTCGTATGAAGATATATCTTTTGGGGACAACTTCTTTATTAAAGACGATCTTTTACAAGAAAATGGTCTCTCCTGGGTGCTGGAGGCTGATTTAGGTGTAGCTGATAAAAAGGAAACTCAAACTGATGAACTTCAGAAGATCGATGTGGGTGTAGCAAATCCAAACCAGGGAGAAAAACCAGTTCAGACTCCCGAGTCTTTGGCATTTAAAATTGAAGAAGAATTATTTAAATTATTTGGTGGTGTTAATAAGAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCCGAAAGATTATGCTCGATGACTGCTGAAGAACTTGCTTCCAAGGAGCTCTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTAGTTTTACCTGACTCTGAAGTTGATATTAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAACAATACGATAATGCCCCCACAGATGTTTCATCTGGGGCTTCTACATTTTCTCAGAGTCAACGTAATAAGAATGAGAATGAAGATGATGGGTCTCCTGATGAACCCGAAACAGTTAAGGACGAGCAGAATATTTCTGGCCAGAAAAATGGTGCATCTGACAAGGATAATTACACCTTCACAATTCCTTCAAATGAAGGGTCCGATTTGATGCAAGGACTCATGGTTGATGATGGACTGAAGGATACGGAATTACTGCCTCCAATCGTCTCCCTGGATGAGTTCATGGAGTCCCTTGATACAGAGCCACCTTTTGATATTTTAGCCGAGGATGCTGGCAAATTGTCGCCTACTTTGGAGAAGGGTGAGTCGGAGCCTAGCTCTCAGTCAAAGGCTGCAGCTCATACTACGAAAGGCGCAACTGATGTTAGTACAGACAGTAATAAGAATAATGAGGAATCTCACACAAAAGCAGATATTGGCTCATCTTCTACCGGCCACGTGGATTTGAAACCTAGTCCTAGCAAAGCTGATGTTGATTCTAATGACAACCAAGCTGGTTTAGGAGCGTCTGACCGGAATGACACTAGAAAATCTAGTGATAGTGATATAAAATCTGGGACAGAATCTCTTGCTAGCACATTTAAGTTGGAACATCTATGGGATGGCATTCTCCAGTACAACATTTCAACAATGACTTCAGTTGTGGGTACCTACATAAGTGGTGAAAGGACTTCAGCGAAAGATTGGCCCGGGATTCTTGAGATTAAAGGGAGAGTCAGATTGGATGCGTTTGAGAAGTTTCTTCAAGAGCTTCCATTATCTCGGAGTCGTGCCGTTATGGTTCTTCATTTGGATGTGAAGGAGGGACGTCCTGAAAGTGAACGAGCAGATCTACGAGAGGTGGCCGAGTCGTATGTCGTGGACGAGCGAGTTGGTATAGCGGATCCTGGTTCTGGGGTTGAATTTTATTTTTGCCCTCCACATGGAAGAATTCTTGAAATGCTTGGCAGGATCCTTTTAAAGGAAACTAATGAGGCACTTAATGCACTTGAAAATGGCCTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACGTCAATGTCACCAAACTCAACGTCACACCACAAACGCAGTTCAAAAAAGCAACATTTTAGTTCTAGAAGACCGCAGGAGACATCAAACTTGAAACCTAATAATATTTCCCCTAAACAGACTATGTCTCATGGCTATTTCCCTGTCCTCGCCACTCCTCATCCTCCGCCTGAGGAAGATGATGCTGATGGTGATGATGACGTCCCTCCCGGATTTGGTCCTTCAACTGCTCGGGATGAAGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAAACCCTCCCGGGTTTTCTTCGCAGAACAACCACCACCATCCTACTCCTCAAGGGCAGCCATCTAGGCCACCCTCATTCCAACCAGTTTCCCAAACTGGGTCTCGTCCAGTAGAGCAAATGCGAGAGCTCGTGCACAAATATGGACAAAACTTAGGTAAAAACGCTGCCTACACCGTGAACTGGGGAGAAAGGAGTGGCTTCAGCTCGGTAGCCATCCAACCATGGAATGATGACGACGACGACATCCCCGAGTGGCAACCACAAGCAGTAGCAGCCTCACAACAACAAATGCCTCCTCCCTCGCACTCGCGGTTTCAGCAGCCGACGATTAGGCCTCACTACATGGTGAACCAACAGCAGCAGCCTGTAGGGGCCCGCCCTCCTTTAAATGTAGCTCAACAAGGGACGTGGTGGGTCCCTCAACAAGGCCACAACAACTTACACCCTAATAGCAATTTAAGTGGTAGTCATCATAATAGTAATGGTCAGTTTTATGGGGCATTTGGGAGATCAGCTCCTTCAAATAATAGAGGGTTTTGA | 4941 | 43.45 | MMFKLYLRPAHAPLTLSLSISLSNLSLSLSKAQLLPLFLCTSAESSADRHWRPWSSHYSQCSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSHSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKNPIPVMQSSQLDPITNKMESSLSEAPRGVAVSSNDPSVHQYLVPNRQMELMESISSGSLTQSGMLSRMQRGQVDGKAGNFGRQQFQIPGNQFGGTGNMVRTAEGMLSLPVKRKALIEPFNSLSQQSPLHNKRVAPMEHRPWLQQASGIAKIPHLQIPNNAPAPVPVHSPAGTKRKVQQVESHPTKVGHQRSTASKGQTAAQTPTSKIQNEPTGSVRSKMRESLTSALALVSQQQDKSSNDEKSPPIEAEKSATPKQENPLSSGPAIGHESDDSKKIFSEKVDSVGLEDNVGKMLDKSSLCVNVSDLETLRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVADKKETQTDELQKIDVGVANPNQGEKPVQTPESLAFKIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDSEVDIRRLVKKTHKGEFQVEVEQYDNAPTDVSSGASTFSQSQRNKNENEDDGSPDEPETVKDEQNISGQKNGASDKDNYTFTIPSNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAEDAGKLSPTLEKGESEPSSQSKAAAHTTKGATDVSTDSNKNNEESHTKADIGSSSTGHVDLKPSPSKADVDSNDNQAGLGASDRNDTRKSSDSDIKSGTESLASTFKLEHLWDGILQYNISTMTSVVGTYISGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDVKEGRPESERADLREVAESYVVDERVGIADPGSGVEFYFCPPHGRILEMLGRILLKETNEALNALENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRPQETSNLKPNNISPKQTMSHGYFPVLATPHPPPEEDDADGDDDVPPGFGPSTARDEDDLPEFNFSGSANPPGFSSQNNHHHPTPQGQPSRPPSFQPVSQTGSRPVEQMRELVHKYGQNLGKNAAYTVNWGERSGFSSVAIQPWNDDDDDIPEWQPQAVAASQQQMPPPSHSRFQQPTIRPHYMVNQQQQPVGARPPLNVAQQGTWWVPQQGHNNLHPNSNLSGSHHNSNGQFYGAFGRSAPSNNRGF | 1646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29442722 | 29463961 | + | ClCG05G017180.2 | Cla05g01761 | 273251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1130 | 1156 | - | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1186 | 1202 | - | - | |
Cla05g01761 | 1646 | Pfam | Cyclin, C-terminal domain | 402 | 520 | IPR004367 | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1614 | 1646 | - | - | |
Cla05g01761 | 1646 | SUPERFAMILY | Elongation factor TFIIS domain 2 | 897 | 968 | IPR036575 | GO:0006351 | |
Cla05g01761 | 1646 | Pfam | Transcription factor S-II (TFIIS), central domain | 895 | 979 | IPR003618 | GO:0006351 | |
Cla05g01761 | 1646 | SMART | cyclin_7 | 309 | 393 | IPR013763 | - | |
Cla05g01761 | 1646 | SMART | cyclin_7 | 406 | 494 | IPR013763 | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 670 | 788 | - | - | |
Cla05g01761 | 1646 | CDD | CYCLIN | 303 | 392 | IPR013763 | - | |
Cla05g01761 | 1646 | Pfam | Cyclin, N-terminal domain | 273 | 400 | IPR006671 | - | |
Cla05g01761 | 1646 | SUPERFAMILY | Cyclin-like | 401 | 515 | IPR036915 | - | |
Cla05g01761 | 1646 | CDD | CYCLIN | 400 | 492 | IPR013763 | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1377 | 1502 | - | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1008 | 1077 | - | - | |
Cla05g01761 | 1646 | SMART | mid_6 | 867 | 975 | IPR003618 | GO:0006351 | |
Cla05g01761 | 1646 | ProSitePatterns | Cyclins signature. | 304 | 335 | IPR006671 | - | |
Cla05g01761 | 1646 | Gene3D | - | 287 | 400 | - | - | |
Cla05g01761 | 1646 | Pfam | SPOC domain | 1225 | 1370 | IPR012921 | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1052 | 1077 | - | - | |
Cla05g01761 | 1646 | Gene3D | - | 875 | 967 | IPR036575 | GO:0006351 | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1466 | 1483 | - | - | |
Cla05g01761 | 1646 | SMART | Cyclin_C_2 | 402 | 529 | IPR004367 | - | |
Cla05g01761 | 1646 | SUPERFAMILY | Cyclin-like | 265 | 399 | IPR036915 | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1399 | 1417 | - | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1013 | 1031 | - | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 1110 | 1215 | - | - | |
Cla05g01761 | 1646 | MobiDBLite | consensus disorder prediction | 689 | 754 | - | - | |
Cla05g01761 | 1646 | Gene3D | - | 273 | 515 | - | - | |
Cla05g01761 | 1646 | PANTHER | SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN | 547 | 1634 | - | - | |
Cla05g01761 | 1646 | ProSiteProfiles | TFIIS central domain profile. | 876 | 992 | IPR003618 | GO:0006351 | |
Cla05g01761 | 1646 | PANTHER | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN | 547 | 1634 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01761 | Cla-Chr5:29442722 | Cla09g00216 | Cla-Chr9:2169330 | 2.52E-124 | dispersed | |
Cla07g00521 | Cla-Chr7:7735317 | Cla05g01761 | Cla-Chr5:29442722 | 1.52E-15 | transposed | |
Cla11g00539 | Cla-Chr11:6131877 | Cla05g01761 | Cla-Chr5:29442722 | 1.27E-09 | transposed | |
Cla05g01761 | Cla-Chr5:29442722 | Cla08g01290 | Cla-Chr8:25779251 | 4.54E-121 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01761 | - | - | csv:101216628 | 1901.72 |