Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01761 ATGATGTTCAAACTGTACCTTCGTCCCGCCCACGCTCCTTTGACGCTCTCACTCTCTATTTCTCTCTCTAATCTCTCACTCTCTCTGTCCAAAGCTCAGCTTCTCCCGCTCTTTCTCTGTACTTCTGCCGAGAGCTCTGCAGACCGCCATTGGAGGCCGTGGAGCTCTCACTACAGCCAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCGTCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCTCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCACACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGGGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGAATCCAATACCAGTAATGCAAAGTAGTCAATTGGACCCTATAACAAACAAAATGGAATCTTCACTATCAGAAGCTCCAAGAGGGGTTGCAGTTTCTTCCAATGATCCTTCTGTTCATCAATATTTAGTACCTAACAGGCAAATGGAACTAATGGAATCAATTTCTAGTGGCTCTCTAACTCAGAGTGGAATGCTATCACGCATGCAAAGAGGACAGGTTGATGGTAAAGCTGGGAATTTTGGACGGCAACAATTTCAAATACCTGGCAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCGGAAGGGATGCTGTCACTTCCTGTGAAGCGCAAGGCATTGATCGAGCCTTTTAACTCTCTCTCACAGCAGTCTCCATTGCATAATAAGCGTGTTGCACCCATGGAACATCGACCATGGTTGCAACAAGCTTCTGGAATAGCCAAAATACCTCATTTACAAATACCAAACAATGCCCCAGCTCCTGTACCGGTGCATTCCCCTGCAGGAACCAAAAGGAAGGTACAACAAGTGGAATCACATCCAACTAAAGTTGGACATCAACGTTCCACTGCTTCCAAAGGGCAGACTGCTGCACAGACTCCAACTTCCAAAATACAAAATGAGCCAACTGGATCTGTGAGATCGAAGATGAGGGAATCCTTGACTTCTGCATTAGCATTGGTTTCACAGCAGCAAGACAAATCATCTAATGATGAAAAAAGTCCTCCCATCGAGGCTGAAAAATCTGCAACTCCAAAGCAGGAAAATCCTTTGTCATCTGGTCCAGCTATTGGTCATGAATCTGATGACTCGAAGAAAATCTTTTCTGAAAAAGTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCGCTATGTGTAAATGTTAGTGATTTAGAGACACTTAGATATGATGGACGTGTCTTTCAACCTAACAATGTTTTGTCGTATGAAGATATATCTTTTGGGGACAACTTCTTTATTAAAGACGATCTTTTACAAGAAAATGGTCTCTCCTGGGTGCTGGAGGCTGATTTAGGTGTAGCTGATAAAAAGGAAACTCAAACTGATGAACTTCAGAAGATCGATGTGGGTGTAGCAAATCCAAACCAGGGAGAAAAACCAGTTCAGACTCCCGAGTCTTTGGCATTTAAAATTGAAGAAGAATTATTTAAATTATTTGGTGGTGTTAATAAGAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCCGAAAGATTATGCTCGATGACTGCTGAAGAACTTGCTTCCAAGGAGCTCTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTAGTTTTACCTGACTCTGAAGTTGATATTAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAACAATACGATAATGCCCCCACAGATGTTTCATCTGGGGCTTCTACATTTTCTCAGAGTCAACGTAATAAGAATGAGAATGAAGATGATGGGTCTCCTGATGAACCCGAAACAGTTAAGGACGAGCAGAATATTTCTGGCCAGAAAAATGGTGCATCTGACAAGGATAATTACACCTTCACAATTCCTTCAAATGAAGGGTCCGATTTGATGCAAGGACTCATGGTTGATGATGGACTGAAGGATACGGAATTACTGCCTCCAATCGTCTCCCTGGATGAGTTCATGGAGTCCCTTGATACAGAGCCACCTTTTGATATTTTAGCCGAGGATGCTGGCAAATTGTCGCCTACTTTGGAGAAGGGTGAGTCGGAGCCTAGCTCTCAGTCAAAGGCTGCAGCTCATACTACGAAAGGCGCAACTGATGTTAGTACAGACAGTAATAAGAATAATGAGGAATCTCACACAAAAGCAGATATTGGCTCATCTTCTACCGGCCACGTGGATTTGAAACCTAGTCCTAGCAAAGCTGATGTTGATTCTAATGACAACCAAGCTGGTTTAGGAGCGTCTGACCGGAATGACACTAGAAAATCTAGTGATAGTGATATAAAATCTGGGACAGAATCTCTTGCTAGCACATTTAAGTTGGAACATCTATGGGATGGCATTCTCCAGTACAACATTTCAACAATGACTTCAGTTGTGGGTACCTACATAAGTGGTGAAAGGACTTCAGCGAAAGATTGGCCCGGGATTCTTGAGATTAAAGGGAGAGTCAGATTGGATGCGTTTGAGAAGTTTCTTCAAGAGCTTCCATTATCTCGGAGTCGTGCCGTTATGGTTCTTCATTTGGATGTGAAGGAGGGACGTCCTGAAAGTGAACGAGCAGATCTACGAGAGGTGGCCGAGTCGTATGTCGTGGACGAGCGAGTTGGTATAGCGGATCCTGGTTCTGGGGTTGAATTTTATTTTTGCCCTCCACATGGAAGAATTCTTGAAATGCTTGGCAGGATCCTTTTAAAGGAAACTAATGAGGCACTTAATGCACTTGAAAATGGCCTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACGTCAATGTCACCAAACTCAACGTCACACCACAAACGCAGTTCAAAAAAGCAACATTTTAGTTCTAGAAGACCGCAGGAGACATCAAACTTGAAACCTAATAATATTTCCCCTAAACAGACTATGTCTCATGGCTATTTCCCTGTCCTCGCCACTCCTCATCCTCCGCCTGAGGAAGATGATGCTGATGGTGATGATGACGTCCCTCCCGGATTTGGTCCTTCAACTGCTCGGGATGAAGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAAACCCTCCCGGGTTTTCTTCGCAGAACAACCACCACCATCCTACTCCTCAAGGGCAGCCATCTAGGCCACCCTCATTCCAACCAGTTTCCCAAACTGGGTCTCGTCCAGTAGAGCAAATGCGAGAGCTCGTGCACAAATATGGACAAAACTTAGGTAAAAACGCTGCCTACACCGTGAACTGGGGAGAAAGGAGTGGCTTCAGCTCGGTAGCCATCCAACCATGGAATGATGACGACGACGACATCCCCGAGTGGCAACCACAAGCAGTAGCAGCCTCACAACAACAAATGCCTCCTCCCTCGCACTCGCGGTTTCAGCAGCCGACGATTAGGCCTCACTACATGGTGAACCAACAGCAGCAGCCTGTAGGGGCCCGCCCTCCTTTAAATGTAGCTCAACAAGGGACGTGGTGGGTCCCTCAACAAGGCCACAACAACTTACACCCTAATAGCAATTTAAGTGGTAGTCATCATAATAGTAATGGTCAGTTTTATGGGGCATTTGGGAGATCAGCTCCTTCAAATAATAGAGGGTTTTGA 4941 43.45 MMFKLYLRPAHAPLTLSLSISLSNLSLSLSKAQLLPLFLCTSAESSADRHWRPWSSHYSQCSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSHSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKNPIPVMQSSQLDPITNKMESSLSEAPRGVAVSSNDPSVHQYLVPNRQMELMESISSGSLTQSGMLSRMQRGQVDGKAGNFGRQQFQIPGNQFGGTGNMVRTAEGMLSLPVKRKALIEPFNSLSQQSPLHNKRVAPMEHRPWLQQASGIAKIPHLQIPNNAPAPVPVHSPAGTKRKVQQVESHPTKVGHQRSTASKGQTAAQTPTSKIQNEPTGSVRSKMRESLTSALALVSQQQDKSSNDEKSPPIEAEKSATPKQENPLSSGPAIGHESDDSKKIFSEKVDSVGLEDNVGKMLDKSSLCVNVSDLETLRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVADKKETQTDELQKIDVGVANPNQGEKPVQTPESLAFKIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDSEVDIRRLVKKTHKGEFQVEVEQYDNAPTDVSSGASTFSQSQRNKNENEDDGSPDEPETVKDEQNISGQKNGASDKDNYTFTIPSNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAEDAGKLSPTLEKGESEPSSQSKAAAHTTKGATDVSTDSNKNNEESHTKADIGSSSTGHVDLKPSPSKADVDSNDNQAGLGASDRNDTRKSSDSDIKSGTESLASTFKLEHLWDGILQYNISTMTSVVGTYISGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDVKEGRPESERADLREVAESYVVDERVGIADPGSGVEFYFCPPHGRILEMLGRILLKETNEALNALENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRPQETSNLKPNNISPKQTMSHGYFPVLATPHPPPEEDDADGDDDVPPGFGPSTARDEDDLPEFNFSGSANPPGFSSQNNHHHPTPQGQPSRPPSFQPVSQTGSRPVEQMRELVHKYGQNLGKNAAYTVNWGERSGFSSVAIQPWNDDDDDIPEWQPQAVAASQQQMPPPSHSRFQQPTIRPHYMVNQQQQPVGARPPLNVAQQGTWWVPQQGHNNLHPNSNLSGSHHNSNGQFYGAFGRSAPSNNRGF 1646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29442722 29463961 + ClCG05G017180.2 Cla05g01761 273251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1130 1156 - -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1186 1202 - -
Cla05g01761 1646 Pfam Cyclin, C-terminal domain 402 520 IPR004367 -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1614 1646 - -
Cla05g01761 1646 SUPERFAMILY Elongation factor TFIIS domain 2 897 968 IPR036575 GO:0006351
Cla05g01761 1646 Pfam Transcription factor S-II (TFIIS), central domain 895 979 IPR003618 GO:0006351
Cla05g01761 1646 SMART cyclin_7 309 393 IPR013763 -
Cla05g01761 1646 SMART cyclin_7 406 494 IPR013763 -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 670 788 - -
Cla05g01761 1646 CDD CYCLIN 303 392 IPR013763 -
Cla05g01761 1646 Pfam Cyclin, N-terminal domain 273 400 IPR006671 -
Cla05g01761 1646 SUPERFAMILY Cyclin-like 401 515 IPR036915 -
Cla05g01761 1646 CDD CYCLIN 400 492 IPR013763 -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1377 1502 - -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1008 1077 - -
Cla05g01761 1646 SMART mid_6 867 975 IPR003618 GO:0006351
Cla05g01761 1646 ProSitePatterns Cyclins signature. 304 335 IPR006671 -
Cla05g01761 1646 Gene3D - 287 400 - -
Cla05g01761 1646 Pfam SPOC domain 1225 1370 IPR012921 -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1052 1077 - -
Cla05g01761 1646 Gene3D - 875 967 IPR036575 GO:0006351
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1466 1483 - -
Cla05g01761 1646 SMART Cyclin_C_2 402 529 IPR004367 -
Cla05g01761 1646 SUPERFAMILY Cyclin-like 265 399 IPR036915 -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1399 1417 - -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1013 1031 - -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 1110 1215 - -
Cla05g01761 1646 MobiDBLite consensus disorder prediction 689 754 - -
Cla05g01761 1646 Gene3D - 273 515 - -
Cla05g01761 1646 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 547 1634 - -
Cla05g01761 1646 ProSiteProfiles TFIIS central domain profile. 876 992 IPR003618 GO:0006351
Cla05g01761 1646 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 547 1634 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01761 Cla-Chr5:29442722 Cla09g00216 Cla-Chr9:2169330 2.52E-124 dispersed
Cla07g00521 Cla-Chr7:7735317 Cla05g01761 Cla-Chr5:29442722 1.52E-15 transposed
Cla11g00539 Cla-Chr11:6131877 Cla05g01761 Cla-Chr5:29442722 1.27E-09 transposed
Cla05g01761 Cla-Chr5:29442722 Cla08g01290 Cla-Chr8:25779251 4.54E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01761 - - csv:101216628 1901.72