Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01762 ATGGGAGTAGATTATTACAATATATTGAAGGTGAACAGGAACGCCAATGACGATGATCTCAAGAAGGCGTATAGAAGGTTGGCTATGAAATGGCACCCTGATAAAAACCCCAACAACAAGAAAGAAGCTGAAACCAAATTCAAGCAGATCTCCGAGGCCTATGAGGCAAGATTTTGTTTCTCTTGTTTGTTAGATCCCCAAAGTGGTTTAATCCTCTTCTTCTTATTATTCAACTTATATTACTCTTTAGGGAATATTGTTTCCACAATTTTTTTGTTCTGTTATCTTATAATTGGGGCCGTGTTGAGTGACCCCCAGAAGAAGGCTATTTATGATCAATATGGTGAAGAAGGGTTGAAAGATATGCCACCACCAGGCAGTGCAAGCTTCCCATTTGGAAACGGTGGCGGCGGCGAGTCAAGCGGGTTTAATCCAAGGAATGCAGAAGATATTTTTGCAGAATTTTTTGGGAGCAGCCCTTTTGGGTTTGGTTCATCAGGACCAGGGAAGTCTATGAGGTACCAGTCAGAGGGAGGAGTTTTTGGGGGATTTGGTGGAAGTGAAAACATTTTCAGAACATATAGTGAAAATGTAACACCAAAGAAACCTCCACCAGTTGAGAGCAAATTGCCCTGCACTCTTGAGGAGCTGTATTCAGGATCAACAAGGAAAATGAAGATTTCAAGAACCGTAGTTGATGCAAACGGACGGCAAGTCCCCGAGACAGAGATATTGACCATCGACGTAAAACCTGGTTGGAAGAAAGGAACCAAAATCACCTTTCCAGATAAAGGAAATGAACAACCAAACCAACTGCCCGCAGATCTAGTATTTGTTATTGATGAGAAGCCTCATGATGTTTTCAAAAGAGATGGTAATGATATAACTATGAACCATAGGGTAACATTAGCAGAGGCATTGGGTGGAACCACTATAAATATTACCACACTCGATGGTCGTAACTTATCAATCCCTGTAATAGACATTGTTAGCCCAGGCTATGAGCTCGTGATCGCCAGAGAAGGAATGCCAATCGTAAGAGAACCTGGTAACCGCGGTGATTTGAAGATCAAATTCGACGTGAAATTCCCAACAAGATTAACCCCCGAGCAACGAGCAGGACTCAAACGTGCTCTGGGAGGTTGA 1146 42.5 MGVDYYNILKVNRNANDDDLKKAYRRLAMKWHPDKNPNNKKEAETKFKQISEAYEARFCFSCLLDPQSGLILFFLLFNLYYSLGNIVSTIFLFCYLIIGAVLSDPQKKAIYDQYGEEGLKDMPPPGSASFPFGNGGGGESSGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSMRYQSEGGVFGGFGGSENIFRTYSENVTPKKPPPVESKLPCTLEELYSGSTRKMKISRTVVDANGRQVPETEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVFKRDGNDITMNHRVTLAEALGGTTINITTLDGRNLSIPVIDIVSPGYELVIAREGMPIVREPGNRGDLKIKFDVKFPTRLTPEQRAGLKRALGG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29464438 29466466 - ClCG05G017200.2 Cla05g01762 273252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01762 381 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cla05g01762 381 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cla05g01762 381 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cla05g01762 381 PRINTS DnaJ domain signature 107 126 IPR001623 -
Cla05g01762 381 Gene3D - 205 283 - -
Cla05g01762 381 CDD DnaJ 4 55 IPR001623 -
Cla05g01762 381 Pfam DnaJ C terminal domain 206 364 IPR002939 -
Cla05g01762 381 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 381 - -
Cla05g01762 381 SUPERFAMILY HSP40/DnaJ peptide-binding domain 287 373 IPR008971 GO:0006457|GO:0051082
Cla05g01762 381 CDD DnaJ_C 204 367 - -
Cla05g01762 381 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 381 - -
Cla05g01762 381 SMART dnaj_3 3 68 IPR001623 -
Cla05g01762 381 ProSiteProfiles dnaJ domain profile. 4 115 IPR001623 -
Cla05g01762 381 Gene3D - 284 380 - -
Cla05g01762 381 Gene3D DnaJ domain 3 166 IPR036869 -
Cla05g01762 381 Pfam DnaJ domain 4 55 IPR001623 -
Cla05g01762 381 SUPERFAMILY Chaperone J-domain 3 56 IPR036869 -
Cla05g01762 381 SUPERFAMILY HSP40/DnaJ peptide-binding domain 205 286 IPR008971 GO:0006457|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01762 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101204033 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01762 Cla-Chr5:29464438 Cla10g02092 Cla-Chr10:36621238 5.20E-102 dispersed
Cla05g01762 Cla-Chr5:29464438 Cla05g02486 Cla-Chr5:36254108 1.35E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g327 Blo01g01767 . . . . Bpe02g00177 . . . . . . . . . . . Bhi04g00826 . . . . . Lcy13g1391 Cla05g01762 Cam05g1881 Cec05g1891 Cco05g1954 Clacu05g1871 Cmu05g1753 Cre05g1881 . . . Cone20ag0610 . . Chy04g00260 . . . . . . . . . . . . . . . . . Cpe02g00377 Bhi09g02424 . . . . . . . . . . . . . . . . Cme04g00291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36