Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01774 ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTCAACGATGGATATTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTTTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGACACCTATCTTCTCGTTGATGATCATAAGAAGATAGCTGTACGTTACATTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTGATCTACAGAATTTTCACTGGAAAGATGCACCGCAGTGAGGTCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTTACAAGACTCGCCAAACTAATTTGTGTAAGACATCTTTCCTGGGATAACAAGCTTACTTGTAACGTTCTACTCTCAGACCACTGCTTATATGGAGTTCATCATAAAGAATCAGCAAACACATGGATTGGACTTGAAGTCGAAGATTTTAAGAACAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAGGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGAGAAATTGCCGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCACACAGTGAAGATGGAAAAACCATTTTCTCCAAGTTCATTGAGCACTTGAAGGGGTTAAAAAAGGAGGAGCAAAACGAAATACCCTGCTTGTCAGAATTGCTGGAAGACCTAAATACAGAGCACACAGAACTGAACCAGACACAAAATCAGGGAGTACCGAATTATCATGGAGATCAAAAAATGGAAGGATCTGGACCATTTCCACCTACAGCTCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTTATGGCTGATGGCTCTAAAGTAGAAGATTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1905 42.94 MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKDTYLLVDDHKKIAVRYITSLWFPMDVASTLPFQVIYRIFTGKMHRSEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLAKLICVRHLSWDNKLTCNVLLSDHCLYGVHHKESANTWIGLEVEDFKNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLRFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPHSEDGKTIFSKFIEHLKGLKKEEQNEIPCLSELLEDLNTEHTELNQTQNQGVPNYHGDQKMEGSGPFPPTARIRVIIHEHHPDESTKDGNSKGKLVLLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29601163 29608611 - ClCG05G017310.1 Cla05g01774 273264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01774 634 Pfam Cyclic nucleotide-binding domain 407 490 IPR000595 -
Cla05g01774 634 Pfam KHA, dimerisation domain of potassium ion channel 565 633 IPR021789 -
Cla05g01774 634 Gene3D Jelly Rolls 355 519 IPR014710 -
Cla05g01774 634 ProSiteProfiles cAMP/cGMP binding motif profile. 387 506 IPR000595 -
Cla05g01774 634 SUPERFAMILY Voltage-gated potassium channels 56 310 - -
Cla05g01774 634 Pfam Ion transport protein 61 310 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla05g01774 634 PANTHER POTASSIUM CHANNEL AKT1 62 633 IPR045319 GO:0005249|GO:0006813
Cla05g01774 634 PANTHER POTASSIUM CHANNEL AKT1 1 62 IPR045319 GO:0005249|GO:0006813
Cla05g01774 634 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 633 - -
Cla05g01774 634 SUPERFAMILY cAMP-binding domain-like 316 501 IPR018490 -
Cla05g01774 634 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 1 62 - -
Cla05g01774 634 CDD CAP_ED 387 499 IPR000595 -
Cla05g01774 634 Gene3D - 63 311 - -
Cla05g01774 634 Coils Coil 511 541 - -
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 257 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 283 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 PRINTS EAG/ELK/ERG potassium channel family signature 301 310 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01774 634 ProSiteProfiles KHA domain profile. 565 634 IPR021789 -
Cla05g01774 634 SMART cnmp_10 387 504 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01774 Cla-Chr5:29601163 Cla06g01070 Cla-Chr6:23198647 4.61E-09 dispersed
Cla05g01774 Cla-Chr5:29601163 Cla01g00052 Cla-Chr1:416897 2.62E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01774 K21867 - csv:101215177 1105.12