Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01785 ATGAACTACAACGCTCTCCGAATCTCATTCTCGTCTCTTCCATTATTGAGAACACTCCCAAATTCTTCCTCCCTGAAACCGGCGACCCAAATCGCCGCGAAATCTGCCTACCGTCGAATTGTTATCATGAATTCTAGCTCCTCGTCGTCGTCGACATGTCAAGTTCCAGGGCTAGAATCGGAGGAGATGGATAGAATTGTGGAACAAATGTTCCGGCGCTATTCGTCTTCTTCGTCTTCGGGGATCAAGAGAGGAAAAGGAGTAGCCATTGTTTGGTTCAGAAATGACCTCCGTCTGCTGGACAACGAAGCCCTTTATAAGGCCTGGATTTCGTCCGAGGCTTTGTTGCCGGTGTACTGCGTTGATCCTAGACTTTTTGGTTCTACCTGCTACTTCGGATTTCCTAAAACTGGAGCATTAAGAGCTCAATTTATTGTTGAATGCTTGGCTGACTTGAAAAGGAATTTAACTAAACGAGGCCTTAACTTGCTTATTCAACATGGGAAGCCTGAAGAAATTCTCCCTTCTCTTGCAAAAGCTCTTGGTGCCCACACAGTTTATGCTCAAATGGAAACTTGTAGTGAGGAACTATATGTTGAAAGAATGGTGAGCAAAGGCCTCAAAACTGTGGTGCTATCATCAACCTCAGAGAAGTCTGCCAAGTCGAGTGCTGCTAGAAGCCCTACTTTTCAACTTGTTTGGGGCACCACCATGTACCACATAGACGACCTTCCATTTGACACCAACAGTTTACCTGATGTCTACACCCAATTTCGTAAATCTGTTGAAGCTAAATGTGCAATCCGAGATTGCATTAGACTTCCAGCTCTTCTTGGGCCTCCAGCAAGCATCGATAATTGGGGATCTGTTCCCTCACTTGATAAGCTTGGGCTTCAACCTCCGAGTGTTGTTAAGGGCATGAGGTTTATTGGGGGTGAGAGCGCAGCTCTCTCCAGAATTTATGAGTATTTCTGGAAGAAGGATTTACTACGGATCTATAAGGAAACGAGGAATGGGATGTTAGGACCCGACTACTCAACAAAATTCTCTCCATGGCTTGCTTCAGGAAGCATTTCGCCTCGTCTTATTCATGAAGAGGTAAGGAGATATGAGATGGAAAGGGAAGCAAATCAATCTACTTACTGGGTTTTGTTTGAATTGATGTGGAGGGATTACTTTAGGTTTCTATCAGTCAAATATGGCAATTCTCTTTTTCATCTAGGTGGCCCAAGAAAAGTGGAGTTGAAATGGAATCAAGACAAAAATTTGTTTGAATCCTGGAGAGATGGACGTACAGGGTACCCTCTAGTAGATGCAAATATGAAAGAATTATCAACAACTGGGTTCATGTCAAATCGAGGACGGCAGATAGTATGTTCCTTCCTTGTTCGAGATATGGGTATTGACTGGCGTATGGGAGCTGAATGGTTTGAGACATGCCTTCTCGATTATGACCCTTGCTCCAATTATGGAAATTGGACATATGGAGCTGGAGTTGGGAATGACCCAAGAGAAGATCGTTACTTCAGTATCCCCAAGCAAGCACAGACATACGATCCTGAGGGCGAATACGTGGCGTACTGGTTGCCACGACTACGAATGTTACCCAAAGACAAGAGGCACTTCCCAGGAAAAATGTTGTACATTGAACAAGTCAAACTTCTTCAGGGCCAAGATGAATTTGCAAACGAACTATATGTATATCACAACAAGCAGAGGAAAGGTTTAGTTTCGGGTTTGACTGATGCGCACGAGAAGAAATGTAAGATATTTCATTTCACCGCTTGCAAAGGAAACATAAATGCGAAAGGAGAGGCGTTGGACGTGGGAGTCATCATAGTATTAGAGCACTGCAGGTATGTTCTAGATCTACTGCTTTCGCCTTCTTACTTTTCTTTTTCTGACTGTTCGCCGGATGTTTCGCATCCGGTGTTTACTTTGTCTAATAATATGGCTGAGGAAAAAGCCGCTGGAGAAGGTGAGAAGAAAGATACTGTTGCGGATGTTGCCGGGAAGAAGAAATCCCGGGGGATTTTCTCGCGGCTTTGGAATAGCATCTTCCGAGTACGCGGTGATGATTTCGAGAAGAGGCTTCAGCACATTTCTAAGGAAGAAGCCGCTGTTCTTGCTAGGTTGAAGCGTAGATCCCTAACCTGGCGGCGAATGGCCAGAAATCTTATTATATTTTCTGTCATTTTTGAGATTATTGCAGTTTGTTATGCTATCATAACTACTAGAACTGTAGATATGAACTGGAAGATGAGAGCCTTCAGAGTTTTACCCATGTTTCTTTTGCCTGCATTATCAACTCTGGCTTATACGACTTTTCTCAGCTTCACAAGAATGTGTGATAGGAAGGACCAAAAAACCCTTGAAAGGCTGCGAGCTGAGAGGCAAGCTAAAATTGATGAACTTAAGGAGAAAACAAATTATTACATTACCCAGCAGCTCATCCAGAGATATGACCCTGACCCTGCTGCAAAGGCAGCCGCTGCCACTGTATTGGCTTCCAAGTTGGGAGCAGATTCAGGCTTAAAGGTTCATTTGGGTGACGAATCCAACCCTAATGTTCCATCAGGGAAGAGCAATGATGTTGAATTTGTGCAAGCTGGTAGTGGGCTTCGGAACAGAAAACAAGGTCACTCCCGTTCCAGCAGTGCAGGTAGTGCTTCATTACATCATCCTGATGAAGATGCACGTCGTCCTACAGTATCCGGAAGTCCTCATGCTTCTGAGCATAAGCAGTTGGTTGTCGATCATTACAATCCTCAAGGACCAGCTGTAAATGATGGAGGATGGCTAGCTCGAATTGCCGCACTGCTCGTTGGAGAGGATCCAACACAATCTTATGCACTCATCTGTGGCAACTGCCATATGCACAATGGGCTTGTCAAGAAGGAAGATTTCCCATTCATTACTTACTACTGCCCACATTGCCATGCCTTGAATCGATCCAATCAATCAGAGGAACAAGTTTCTGGCCATGGTAGTCCAAGTGCTGGTTCTGTAAGACCAAGAAGCACTGGTGATCCAGTAGTACTCACCAGCAATGTCAACGCAGAAACAATTTCTGAGATTCAGGACACCACCGAAAATACGGAATCTGCAAACTTAGTTAGCGAAGAAGAAAAGGTACGCACAGCTGAAACAACGTAA 3156 44.42 MNYNALRISFSSLPLLRTLPNSSSLKPATQIAAKSAYRRIVIMNSSSSSSSTCQVPGLESEEMDRIVEQMFRRYSSSSSSGIKRGKGVAIVWFRNDLRLLDNEALYKAWISSEALLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVYAQMETCSEELYVERMVSKGLKTVVLSSTSEKSAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCAIRDCIRLPALLGPPASIDNWGSVPSLDKLGLQPPSVVKGMRFIGGESAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSPWLASGSISPRLIHEEVRRYEMEREANQSTYWVLFELMWRDYFRFLSVKYGNSLFHLGGPRKVELKWNQDKNLFESWRDGRTGYPLVDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPRLRMLPKDKRHFPGKMLYIEQVKLLQGQDEFANELYVYHNKQRKGLVSGLTDAHEKKCKIFHFTACKGNINAKGEALDVGVIIVLEHCRYVLDLLLSPSYFSFSDCSPDVSHPVFTLSNNMAEEKAAGEGEKKDTVADVAGKKKSRGIFSRLWNSIFRVRGDDFEKRLQHISKEEAAVLARLKRRSLTWRRMARNLIIFSVIFEIIAVCYAIITTRTVDMNWKMRAFRVLPMFLLPALSTLAYTTFLSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVHLGDESNPNVPSGKSNDVEFVQAGSGLRNRKQGHSRSSSAGSASLHHPDEDARRPTVSGSPHASEHKQLVVDHYNPQGPAVNDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLVKKEDFPFITYYCPHCHALNRSNQSEEQVSGHGSPSAGSVRPRSTGDPVVLTSNVNAETISEIQDTTENTESANLVSEEEKVRTAETT 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29731184 29744685 - ClCG05G017420.2 Cla05g01785 273275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01785 1051 MobiDBLite consensus disorder prediction 987 1051 - -
Cla05g01785 1051 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 85 284 IPR036155 -
Cla05g01785 1051 MobiDBLite consensus disorder prediction 987 1036 - -
Cla05g01785 1051 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 87 238 IPR006050 -
Cla05g01785 1051 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 406 560 - -
Cla05g01785 1051 TIGRFAM crypto_DASH: cryptochrome, DASH family 88 531 IPR014133 GO:0003913|GO:0006281
Cla05g01785 1051 Gene3D - 236 405 - -
Cla05g01785 1051 MobiDBLite consensus disorder prediction 875 891 - -
Cla05g01785 1051 PANTHER CRYPTOCHROME 70 564 IPR002081 -
Cla05g01785 1051 Coils Coil 788 811 - -
Cla05g01785 1051 Pfam DNA photolyase 89 270 IPR006050 -
Cla05g01785 1051 Gene3D HUPs 50 235 IPR014729 -
Cla05g01785 1051 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 933 983 IPR019273 -
Cla05g01785 1051 Pfam FAD binding domain of DNA photolyase 385 574 IPR005101 -
Cla05g01785 1051 MobiDBLite consensus disorder prediction 1037 1051 - -
Cla05g01785 1051 PANTHER CRYPTOCHROME DASH 70 564 - -
Cla05g01785 1051 PRINTS DNA photolyase signature 432 448 IPR002081 -
Cla05g01785 1051 PRINTS DNA photolyase signature 491 505 IPR002081 -
Cla05g01785 1051 PRINTS DNA photolyase signature 452 470 IPR002081 -
Cla05g01785 1051 MobiDBLite consensus disorder prediction 873 911 - -
Cla05g01785 1051 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 306 552 IPR036134 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01785 K25656 cry, CRYD; cryptochrome - csv:101221042 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01785 Cla-Chr5:29731184 Cla09g00540 Cla-Chr9:5026599 2.06E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36