Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01792 | ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATCTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAAGAGAGCGAGGAGGAGTGGGAAGAAGTCGATCCTGACGAAGACATGGTTGATGGAAATGAGGAGGAGGAGGATGATATTGATGACATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAAAGCTGCATGGTCCACATGCACAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATACATCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTCAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAGGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTACGTTGATGGAAGTGGCAACCAGCTCGTACCGGCAGGGGCTCGAGACAATTCTGTCGAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAACCAGCGAGCAGAAATCGATCAAAACACTTGGTTCCAGGCAATTTCTGCGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATGACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATGAAAGAAATGAATAGAACTGGGTTGGAAGCTATGCGAACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTTCCTAAGAATGTTCCATATTAG | 1185 | 44.81 | MPGLTCNACNKEFLDVEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEEESEEEWEEVDPDEDMVDGNEEEEDDIDDIEVDLDPSCCFMCDLEHDTIESCMVHMHKQHGFFIPDVEYLKDPKGFLTYIGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVEFGSGGAELILVQGTSEQKSIKTLGSRQFLRYYRQKPRPSPANDAAMTAVLAARYRSMGLATVQSREKMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPY | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29806062 | 29809652 | - | ClCG05G017500.2 | Cla05g01792 | 273282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01792 | 394 | SMART | ZnF_U1_5 | 66 | 100 | IPR003604 | GO:0003676|GO:0008270 | |
Cla05g01792 | 394 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
Cla05g01792 | 394 | Pfam | C2H2 type zinc-finger (2 copies) | 168 | 269 | IPR041661 | - | |
Cla05g01792 | 394 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 93 | IPR013087 | - | |
Cla05g01792 | 394 | MobiDBLite | consensus disorder prediction | 112 | 154 | - | - | |
Cla05g01792 | 394 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
Cla05g01792 | 394 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
Cla05g01792 | 394 | SMART | c2h2final6 | 69 | 93 | IPR013087 | - | |
Cla05g01792 | 394 | SMART | c2h2final6 | 217 | 244 | IPR013087 | - | |
Cla05g01792 | 394 | SMART | c2h2final6 | 166 | 189 | IPR013087 | - | |
Cla05g01792 | 394 | MobiDBLite | consensus disorder prediction | 127 | 154 | - | - | |
Cla05g01792 | 394 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 394 | - | - | |
Cla05g01792 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 151 | 253 | IPR036236 | - | |
Cla05g01792 | 394 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 394 | IPR040025 | - | |
Cla05g01792 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01792 | Cla-Chr5:29806062 | Cla08g00283 | Cla-Chr8:6118715 | 7.29E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01792 | K14816 | - | csv:101219700 | 694.501 |