Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01792 ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATCTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAAGAGAGCGAGGAGGAGTGGGAAGAAGTCGATCCTGACGAAGACATGGTTGATGGAAATGAGGAGGAGGAGGATGATATTGATGACATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAAAGCTGCATGGTCCACATGCACAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATACATCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTCAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAGGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTACGTTGATGGAAGTGGCAACCAGCTCGTACCGGCAGGGGCTCGAGACAATTCTGTCGAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAACCAGCGAGCAGAAATCGATCAAAACACTTGGTTCCAGGCAATTTCTGCGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATGACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATGAAAGAAATGAATAGAACTGGGTTGGAAGCTATGCGAACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTTCCTAAGAATGTTCCATATTAG 1185 44.81 MPGLTCNACNKEFLDVEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEEESEEEWEEVDPDEDMVDGNEEEEDDIDDIEVDLDPSCCFMCDLEHDTIESCMVHMHKQHGFFIPDVEYLKDPKGFLTYIGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVEFGSGGAELILVQGTSEQKSIKTLGSRQFLRYYRQKPRPSPANDAAMTAVLAARYRSMGLATVQSREKMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPY 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29806062 29809652 - ClCG05G017500.2 Cla05g01792 273282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01792 394 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
Cla05g01792 394 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cla05g01792 394 Pfam C2H2 type zinc-finger (2 copies) 168 269 IPR041661 -
Cla05g01792 394 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Cla05g01792 394 MobiDBLite consensus disorder prediction 112 154 - -
Cla05g01792 394 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cla05g01792 394 SMART c2h2final6 4 28 IPR013087 -
Cla05g01792 394 SMART c2h2final6 69 93 IPR013087 -
Cla05g01792 394 SMART c2h2final6 217 244 IPR013087 -
Cla05g01792 394 SMART c2h2final6 166 189 IPR013087 -
Cla05g01792 394 MobiDBLite consensus disorder prediction 127 154 - -
Cla05g01792 394 PANTHER ZINC FINGER PROTEIN-RELATED 1 394 - -
Cla05g01792 394 SUPERFAMILY beta-beta-alpha zinc fingers 151 253 IPR036236 -
Cla05g01792 394 PANTHER ZINC FINGER PROTEIN 622 1 394 IPR040025 -
Cla05g01792 394 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01792 Cla-Chr5:29806062 Cla08g00283 Cla-Chr8:6118715 7.29E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01792 K14816 - csv:101219700 694.501