Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01795 ATGTCTCTCACTGGTTATCGAGGCACGCCGGGATATTCGGCTCCAGAGTTCTTGACTAATAATTATCCGATAACGCACAAATGCGACGTGTATAGCTTTGGAATGGTATTGTTTGAGATTGTTGGAAGAAAAAGGAATGCTGGAGTTACGAATTCTGGGAACCCTGATTGGTTTCCACAACATGTTTGGGGGAATTATGAAAAGGGTAAATTAGAAGAATTTACTCGAACGTATGGCATTGAAGAGAACGATAAAGAGAAGGCAGTCAGAATGTGTGAGGTTGCTTTGTGGTGCGTTCAAGACTCTCCAGACGACCGTCCGCCGATGAGTGCAGTGGTGAGGATGCTCGAAGGAGGTGTAGAAATAATGCCACCACCAAAGCCATTTATTTACTTGAATCCAATTCCAAAAAGGAACAGTAAACTGAATCTGCAGCAAACTAGTAGTAGTTCAGATTATTCAACATCCAATGAAGAAAGTGGTTCATTTTGGTACAAGAAGGCTACTCCAATGATGAAGAAATACGAAATACAGATAGCTAATTTTCCAATCGAAAGATCAACCATGGAAATTTCAAGGTTGCTTCCGATTCTTTCCCGCTCATTCAAGAACCAGACCATATCGACTCTTTCTTCAATCCATCAGCTTCTCCATTTTCGCTTATCGCCTGTAAAATCCACTCGCTCACAAAACCCTTGCAAGGTTCAAGCGCAATCGAAGGCGTCGAGAAATGATCGAAATAGCTCTCTTATGCCAATCCTCACCCTCACGCTTCCATCCAGATCCGCCGTTGCCCGGCGGCGAAAATCCATTCACTACCCTGCGGTGGGATCAGTGGTTTCCTTGTTAGTTGTTGCGGTGATTGCCATTTGTGTTTATAAGTTTGCCAAGAAAGCTACACCAGGTGTTGTAAGAGAGTTGAGGAACATAACTGCGCCTCCTCCACTGGCACTTAACGCGGCTCCTGCAGCTATTTGGGAAGTTGATGCACCAACAATGGAGAAATTCTTTCGCGAGATCGCCGAAGAAAAACCAGTCAGATTCACTGCTCGGCAACTCTATACCTTCACAAACAACTACTCGACATGCCTTGGATCTGGAGGTTTTGGTGAGGTTTACAAAGGGAAGTTCCCAAATGGGGTGAATGTTGCAGTGAAGGTTTTAAAGAGAAGCTTAGACAAAAGGGCTGAAGAGCAATTCATGGCTGAGGTAGGATCAATTTGCAGGACTTATCACATTAATCTGGTCAGGCTTTATGGTTTTTGTTATGACCATTTCATGAGTGCACTTGTTTTTGAATACTTAGAAAATGGATCTCTGGACAAGTATTTGTTTGGCAAAAGAAAACAAATTGAATGGAGAAAATTGCATGATATAGCAATTGGAACAGCCAGAGGTCTAGCGATTCACTATGACATTAAACCTGCAAACATTCTTCTAGATGCAAATTTCCTCCCCAAAGTTGGTGATTTTGGGCTTGCCAAGCTCTGCAACAGGGACAACACACACATCTCTTTCAGCGGCTATCGAGGCACTCCCGGTTACTCGGCACCAGAATTTCTGTTGATTAACTATCCAATAACACACAAGTGCAATGTGTATAGCTTTGGAATGGTGTTGTTTGAGATCATTGGAAGAAAGAGCAATGCTAGCACAACTGTTTCTGGGAAACCTGATTGGTTCCCACAGCAAGTGTGGGATGCTTATGAAAATGATAAGTTGGAAGAGTTGATTGTTGGTTGTGGCATAGGAGAGGAAGATAGGGAGATGGCGAGTCGAGCGTGCGAAGTGGCTCTCTGGTGCGTTCAGGACTCCCCCGATGGGCGACCGCCAATGAGTGCAGTTGTGAAGATGTTGGAGGGAGGAGTTGAGATAATGCCACCAGCAAAGCCATTTCAATATTTGAATTCAATGAAAATGGGGAGTTCAACAATTTCACAACAAACAAGCGGTACAAGTTCAGAGTCTTGGACAAGCAGAGAAAGTAATTCTCAATGGTACAGGCAGACTACAACAATCATGAGAAAATACGAAATACAAATGGCTACAAATAATTCTACCATCTTTCAAATTCTCTCTCCAGATAGTTTCAATGGCGGCTTGGATGATCGGAATAATAATCCTACTCTGCCATCTCCACTCCATCGGCGCAGGGCGGCGGCGGAAATCCAACCCGTGGTCGGCTCTGTGTTTGGATTGCTCATTCTCATGGCGATTGTCATATTCTCTTACAAATTTGCCAAGAAAGTTGTACCAGATGTCGTAAAAGAATGGAGAAACACATCCACTCCCGCACCGGCAGAGATTTGGGGAGTAGATACACCGGAAATGGAGAAATTCCTCCGAGAAATCGCTGAGGAAAGTCCGATCAGATTCACCTCTCAGCAACTCAACGCCTTCACTAGCAACTACTCAACGCTGTTAGGTTCCGGCGGTTTCAGCGATGTTTACAAAGGCCAGTTCCCAAACGGATTGAAGATCGCAGTGAAGATTCTCAAGAGAAACTCCGACAAAAAAGTCGAAAACCAATTCATGGCGGAAATCGGAACGATCGGAAGAACTCGCCATCGAAATCTTCTCAGGCTGTACGGATTCTGTTACGACGAATTCATGAGCGCGCTGGTTTTGGAGTATATGGAGAACGGATCGCTCGACAGATTCTTGTACGGAAAAAGCAAGAACGAACTCGATTGGGAGAAATTGCTGGAAATCGCGATCGGAACCGCTAGAGGAATTGCTTATATGCACGAAGAATGCCAGAGGAAAATCATCCATTACGATATCAAACCTGCGAACATTCTATTAGATGAAAATTTCTCACCGAAAGTCGGCGATTTCGGACTCGCGAATCTCTGCAACAAAGACAACACGCATGTATCTCCCACAGAATATCGAGGAACTCTGGGATATTCGGCACCAGAGCTCTTGAGGTTCAATTTTCCGGTGACTTACCAATGCGATGTATACAGTTTTGGAATGGTGCTGTTTGAGATGGTGGGAAGGAGGAAGAACGCCGCCGTCGGTCCGTCGGGGAGCATCGATTGGTTTCCGATTCAGGTATGGGAGCGGTTTGAGAAGGGCGAATTAGTGAATATGAGCAGCGACTGTGATGTTGAAGAGAATGGAGAGAGGAAAATGGTGATCGAGAGAATTTGTGTGGTGGCTCTTTGGTGCGTGCAGGATTCGCCGGAGGATCGGCCTCCAATGAGTGCGGTAGTGAAGATGTTGGAAGGAAGCGTTGAGATAGTGCCGCCGCCGAAGCCATTTCAGTACATGTTTCCAATTTCGACGGATACCAGCACCCTCGCCGTCGCCATGGATTCCGAGCAAATGAGCTCTGGTTCGACTTCGAGCTATTCTGTAAGTAAAGGAAATCTTCCGATTTGGTATAAAGGCTCGGCGTCTGCCCCTATTTTGAGAACTTGA 3426 45.21 MSLTGYRGTPGYSAPEFLTNNYPITHKCDVYSFGMVLFEIVGRKRNAGVTNSGNPDWFPQHVWGNYEKGKLEEFTRTYGIEENDKEKAVRMCEVALWCVQDSPDDRPPMSAVVRMLEGGVEIMPPPKPFIYLNPIPKRNSKLNLQQTSSSSDYSTSNEESGSFWYKKATPMMKKYEIQIANFPIERSTMEISRLLPILSRSFKNQTISTLSSIHQLLHFRLSPVKSTRSQNPCKVQAQSKASRNDRNSSLMPILTLTLPSRSAVARRRKSIHYPAVGSVVSLLVVAVIAICVYKFAKKATPGVVRELRNITAPPPLALNAAPAAIWEVDAPTMEKFFREIAEEKPVRFTARQLYTFTNNYSTCLGSGGFGEVYKGKFPNGVNVAVKVLKRSLDKRAEEQFMAEVGSICRTYHINLVRLYGFCYDHFMSALVFEYLENGSLDKYLFGKRKQIEWRKLHDIAIGTARGLAIHYDIKPANILLDANFLPKVGDFGLAKLCNRDNTHISFSGYRGTPGYSAPEFLLINYPITHKCNVYSFGMVLFEIIGRKSNASTTVSGKPDWFPQQVWDAYENDKLEELIVGCGIGEEDREMASRACEVALWCVQDSPDGRPPMSAVVKMLEGGVEIMPPAKPFQYLNSMKMGSSTISQQTSGTSSESWTSRESNSQWYRQTTTIMRKYEIQMATNNSTIFQILSPDSFNGGLDDRNNNPTLPSPLHRRRAAAEIQPVVGSVFGLLILMAIVIFSYKFAKKVVPDVVKEWRNTSTPAPAEIWGVDTPEMEKFLREIAEESPIRFTSQQLNAFTSNYSTLLGSGGFSDVYKGQFPNGLKIAVKILKRNSDKKVENQFMAEIGTIGRTRHRNLLRLYGFCYDEFMSALVLEYMENGSLDRFLYGKSKNELDWEKLLEIAIGTARGIAYMHEECQRKIIHYDIKPANILLDENFSPKVGDFGLANLCNKDNTHVSPTEYRGTLGYSAPELLRFNFPVTYQCDVYSFGMVLFEMVGRRKNAAVGPSGSIDWFPIQVWERFEKGELVNMSSDCDVEENGERKMVIERICVVALWCVQDSPEDRPPMSAVVKMLEGSVEIVPPPKPFQYMFPISTDTSTLAVAMDSEQMSSGSTSSYSVSKGNLPIWYKGSASAPILRT 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29822221 29835381 + ClCG05G017520.1 Cla05g01795 273285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01795 1141 ProSitePatterns Protein kinases ATP-binding region signature. 808 830 IPR017441 GO:0005524
Cla05g01795 1141 PANTHER RUST RESISTANCE KINASE LR10-RELATED 329 680 IPR045874 GO:0004672
Cla05g01795 1141 Gene3D Phosphorylase Kinase; domain 1 332 434 - -
Cla05g01795 1141 Gene3D Phosphorylase Kinase; domain 1 776 878 - -
Cla05g01795 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Cla05g01795 1141 Gene3D Transferase(Phosphotransferase) domain 1 879 1082 - -
Cla05g01795 1141 Gene3D Transferase(Phosphotransferase) domain 1 435 626 - -
Cla05g01795 1141 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Cla05g01795 1141 CDD STKc_IRAK 808 1078 - -
Cla05g01795 1141 ProSiteProfiles Protein kinase domain profile. 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01795 1141 SMART serkin_6 358 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01795 1141 SMART serkin_6 802 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01795 1141 SUPERFAMILY Protein kinase-like (PK-like) 348 659 IPR011009 -
Cla05g01795 1141 SUPERFAMILY Protein kinase-like (PK-like) 792 1116 IPR011009 -
Cla05g01795 1141 PANTHER RECEPTOR SERINE/THREONINE KINASE 7 159 - -
Cla05g01795 1141 PANTHER RECEPTOR SERINE/THREONINE KINASE 756 1099 - -
Cla05g01795 1141 PANTHER RECEPTOR SERINE/THREONINE KINASE 329 680 - -
Cla05g01795 1141 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Cla05g01795 1141 MobiDBLite consensus disorder prediction 643 662 - -
Cla05g01795 1141 Pfam Protein tyrosine and serine/threonine kinase 806 1076 IPR001245 GO:0004672|GO:0006468
Cla05g01795 1141 Pfam Protein tyrosine and serine/threonine kinase 362 619 IPR001245 GO:0004672|GO:0006468
Cla05g01795 1141 Pfam Protein tyrosine and serine/threonine kinase 12 116 IPR001245 GO:0004672|GO:0006468
Cla05g01795 1141 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 159 IPR045874 GO:0004672
Cla05g01795 1141 PANTHER RUST RESISTANCE KINASE LR10-RELATED 756 1099 IPR045874 GO:0004672
Cla05g01795 1141 ProSiteProfiles Protein kinase domain profile. 802 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01795 1141 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01795 1141 SUPERFAMILY Protein kinase-like (PK-like) 3 152 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01795 - - - csv:101213257 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01795 Cla-Chr5:29822221 Cla08g01336 Cla-Chr8:26213653 4.45E-22 dispersed
Cla05g01794 Cla-Chr5:29815938 Cla05g01795 Cla-Chr5:29822221 3.82E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80579 PF07714 PK_Tyr_Ser-Thr 6.30E-45 CL0016 Cla PK