Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01798 ATGGCCAGCCCTATCACTCTCCAAGAGATTCGAAACGAGTCCGTTGATCTGGAACGTATTCCCATCGACGATGTGTTCGAGAAGCTGAAATGTTCAAAAGAAGGACTCACTTCAGAGGAAGGGGCCAATCGGCTTCAAGTTTTTGGACCCAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTTATGGAAGTAGCTGCTATAATGGCTATTGTCTTAGCAAACGGGGGTGGAAGGCCAGCGGATTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTTATCAACTCAACCATCTCTTTTATTGAAGAGAATAATGCAGGGAACGCAGCTGCAGCCCTTATGGCTGGTCTTGCTCCAAAGACCAAGGTTCTCAGAGATGGTCATTGGAGTGAACAAGATGCTGCCATTCTTGTTCCCGGAGATATAATAAGCATCAAACTGGGAGATATAATCCCTGCTGATGCACGTCTTCTCCAAGGGGACCCTTTGAAAATTGACCAATCTGCACTAACTGGCGAGTCTCTTCCTGTTACCAAAAACCCTTCAGATGAAGTTTTCTCAGGATCAACCTGTAAACAGGGAGAAATTGAAGCAATAGTGATTGCCACTGGTGTCCATACCTTCTTTGGTAAAGCTGCTCATTTAGTGGACAACACCAATCAAGTGGGGCATTTCCAAAAAGTTCTAACTGCCATTGGGAATTTCTGTATTTGCTCAATTGCCATTGGAATTATAATTGAGATCATTGTCATGTACCCAATTCAACACCGTGCGTATAGGGATGGCATTGACAATTTGCTGGTGCTTTTAATTGGAGGAATTCCTATTGCCATGCCTACTGTTTTGTCTGTCACTATGGCTATTGGTTCCCACCGACTTTCTAAGCAAGGTGCAATTACAAAACGGATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACTGGAACATTAACTTTGAATAAGCTCACTGTTGACCAATCCTTGACTGAAGTCCTTGTAGGGGGTATGGATAAAGAACAAGTCATTCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCCATTGACGCTGCTATTGTTGGGATGTTGGCAGATCCAAAAGAAGCGCGAGCTGGTATCAGAGAGGTTCATTTTTTTCCATTCAACCCTGTAGATAAGAGAACTGCCCTGACTTATATTGATTCTCATGATAATTGGCATCGAGTTAGCAAAGGTGCTCCAGAGCAGATTTTAAATCTTTGCAATTCTAGCGAACCCATCAGGAAAAAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGTGGGCTCCGATCTCTGGGTGTTGCTAGACAGGAAGTACCTGAGAGAACCAAAGAAAGCCCCGGAGAACCGTGGCAACTTGTTGGTCTATTAGCTTTATTTGATCCTCCCAGGCATGATAGCGCAGAAACCATTCGAAGGGCTCTAAATCTTGGAGTAAATGTCAAGATGATTACTGGGGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCATCTGCATTACTCTCTCAAGACAGGGGTGCATCCGCAGATTCCCTTCCAGTGGACGAGTTGATTGAAACAGCTGATGGATTTGCTGGAGTATTTCCAGCTTATTTATACATGGCAGAACACAAGTATGAAATTGTGAGAAGGTTACAAGAGAAGAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCCCCTGCACTAAAAAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCAGCCAGAAGCGCTTCTGATATCGTCCTCACTGAACCTGGATTGAGTGTCATAATTAGTGCGGTGCTGACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATCCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAGGTTTGATTTCGCTCCATTCATGGTTTTAATCATAGCTATTCTTAATGATGGAACAATCATGACTATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCTGACAGCTGGAAGTTGAAGGAAATTTTCGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTAGTGTTTTTTTGGATCATGAAAGATACTGACTTTTTCACGAACACGTTTCACGTACCATCTCTAAGGAACAACGACCCGAAAATGATGGCAGCATTGTATCTACAAGTCAGTATCGTGAGTCAGGCCCTTATTTTCGTCACACGGTCTCGTAGTTGGTCCTTCGTTGAACGTCCTGGAATTTTGTTAGTGGTTGCTTTCATATTGGCCCAGCTGATTGCAACTATAATAGCAGTGTATGGAAAATGGGATTTTGCAAGGATGCATGGCGCTGGCTGGGGATGGGCTGGTGTCATTTGGCTATACAGTTTAATAACTTATATCCCTCTCGATATTCTCAAATTCACCATTCGCTATGCTCTCAGTGGACGAGCTTGGAACAACCTTTTGCAAAATAAGACTGCTTTCACTACAAAGAAAGATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACCACACAAAGAACTATTCATGGTCTTCAACCACCTCAAACCAGCAACACTGCTTCTGATAGAATCAGTTGTGGCGGTGAGCTTTCCGAAATCGCCGAGCAAGCCAAGCGACGAGCTGAAATTGCAAGGCTCCGCGAGTTGCACACTCTGAAAGGTCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACGGTTTAA 2880 43.82 MASPITLQEIRNESVDLERIPIDDVFEKLKCSKEGLTSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEVAAIMAIVLANGGGRPADWQDFVGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGHWSEQDAAILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAIGIIIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQSLTEVLVGGMDKEQVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSHDNWHRVSKGAPEQILNLCNSSEPIRKKVHGVIDKFAECGLRSLGVARQEVPERTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRGASADSLPVDELIETADGFAGVFPAYLYMAEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVVFFWIMKDTDFFTNTFHVPSLRNNDPKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGILLVVAFILAQLIATIIAVYGKWDFARMHGAGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQTSNTASDRISCGGELSEIAEQAKRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29892197 29897456 + ClCG05G017550.1 Cla05g01798 273288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01798 959 Pfam haloacid dehalogenase-like hydrolase 326 609 - -
Cla05g01798 959 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Cla05g01798 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 595 614 - -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 618 630 - -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cla05g01798 959 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cla05g01798 959 Gene3D - 133 217 - -
Cla05g01798 959 SFLD p-type atpase 312 646 IPR044492 -
Cla05g01798 959 PANTHER CALCIUM-TRANSPORTING ATPASE 3 939 - -
Cla05g01798 959 Pfam E1-E2 ATPase 132 310 - -
Cla05g01798 959 Gene3D - 911 959 - -
Cla05g01798 959 SUPERFAMILY HAD-like 326 642 IPR036412 -
Cla05g01798 959 Gene3D - 95 822 - -
Cla05g01798 959 PRINTS H+-transporting ATPase (proton pump) signature 567 583 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 PRINTS H+-transporting ATPase (proton pump) signature 767 788 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 PRINTS H+-transporting ATPase (proton pump) signature 595 611 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 PRINTS H+-transporting ATPase (proton pump) signature 626 651 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 PANTHER PLASMA MEMBRANE ATPASE 3 939 - -
Cla05g01798 959 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cla05g01798 959 Gene3D - 342 489 IPR023299 GO:0000166
Cla05g01798 959 SFLD Haloacid Dehalogenase 312 646 - -
Cla05g01798 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 854 IPR023298 -
Cla05g01798 959 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 813 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla05g01798 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 685 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g01798 959 CDD P-type_ATPase_H 35 848 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla05g01798 959 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cla05g01798 959 Gene3D - 327 632 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01798 Cla-Chr5:29892197 Cla11g01171 Cla-Chr11:24491447 0 dispersed
Cla05g01798 Cla-Chr5:29892197 Cla08g01268 Cla-Chr8:25581049 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01798 K01535 - csv:101219224 1704.11