Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01809 | ATGAATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGATTTAAAAGAGAGCGAGACAGCGGCGGTGAAGAGAAGGAGGCGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGGACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACTGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGCGGTGATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG | 804 | 46.89 | MNRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDSGGEEKEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGDASPPNTFSIGSKPHFLKFPFKHPSAAC | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30009259 | 30012384 | + | ClCG05G017650.1 | Cla05g01809 | 273299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01809 | 267 | Pfam | Homeodomain | 115 | 169 | IPR001356 | GO:0003677 | |
Cla05g01809 | 267 | PANTHER | - | 69 | 234 | - | - | |
Cla05g01809 | 267 | Coils | Coil | 170 | 207 | - | - | |
Cla05g01809 | 267 | CDD | homeodomain | 114 | 172 | IPR001356 | GO:0003677 | |
Cla05g01809 | 267 | ProSitePatterns | 'Homeobox' domain signature. | 146 | 169 | IPR017970 | GO:0000981|GO:0006355 | |
Cla05g01809 | 267 | MobiDBLite | consensus disorder prediction | 69 | 87 | - | - | |
Cla05g01809 | 267 | SMART | halz | 171 | 214 | IPR003106 | GO:0006355|GO:0043565 | |
Cla05g01809 | 267 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 69 | 234 | - | - | |
Cla05g01809 | 267 | SUPERFAMILY | Homeodomain-like | 112 | 179 | IPR009057 | - | |
Cla05g01809 | 267 | SMART | HOX_1 | 113 | 175 | IPR001356 | GO:0003677 | |
Cla05g01809 | 267 | MobiDBLite | consensus disorder prediction | 69 | 99 | - | - | |
Cla05g01809 | 267 | Gene3D | - | 106 | 176 | - | - | |
Cla05g01809 | 267 | ProSiteProfiles | 'Homeobox' domain profile. | 111 | 171 | IPR001356 | GO:0003677 | |
Cla05g01809 | 267 | Pfam | Homeobox associated leucine zipper | 171 | 204 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01809 | Cla-Chr5:30009259 | Cla10g00795 | Cla-Chr10:17043236 | 2.38E-70 | dispersed | |
Cla05g01809 | Cla-Chr5:30009259 | Cla10g01677 | Cla-Chr10:32506524 | 2.95E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61117 | PF00046 | Homeodomain | 3.90E-17 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01809 | K09338 | - | csv:101212868 | 362.844 |