Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01809 ATGAATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGATTTAAAAGAGAGCGAGACAGCGGCGGTGAAGAGAAGGAGGCGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGGACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACTGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGCGGTGATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 804 46.89 MNRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDSGGEEKEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGDASPPNTFSIGSKPHFLKFPFKHPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30009259 30012384 + ClCG05G017650.1 Cla05g01809 273299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01809 267 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Cla05g01809 267 PANTHER - 69 234 - -
Cla05g01809 267 Coils Coil 170 207 - -
Cla05g01809 267 CDD homeodomain 114 172 IPR001356 GO:0003677
Cla05g01809 267 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Cla05g01809 267 MobiDBLite consensus disorder prediction 69 87 - -
Cla05g01809 267 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Cla05g01809 267 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 69 234 - -
Cla05g01809 267 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Cla05g01809 267 SMART HOX_1 113 175 IPR001356 GO:0003677
Cla05g01809 267 MobiDBLite consensus disorder prediction 69 99 - -
Cla05g01809 267 Gene3D - 106 176 - -
Cla05g01809 267 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Cla05g01809 267 Pfam Homeobox associated leucine zipper 171 204 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01809 Cla-Chr5:30009259 Cla10g00795 Cla-Chr10:17043236 2.38E-70 dispersed
Cla05g01809 Cla-Chr5:30009259 Cla10g01677 Cla-Chr10:32506524 2.95E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61117 PF00046 Homeodomain 3.90E-17 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01809 K09338 - csv:101212868 362.844