Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01810 | ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGAACAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA | 1092 | 46.15 | MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30014939 | 30019832 | - | ClCG05G017660.1 | Cla05g01810 | 273300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01810 | 363 | Pfam | ELK domain | 245 | 266 | IPR005539 | GO:0003677 | |
Cla05g01810 | 363 | Gene3D | - | 270 | 332 | - | - | |
Cla05g01810 | 363 | Pfam | KNOX1 domain | 102 | 144 | IPR005540 | GO:0003677|GO:0005634 | |
Cla05g01810 | 363 | SMART | ELK_2 | 161 | 181 | IPR005539 | GO:0003677 | |
Cla05g01810 | 363 | SMART | ELK_2 | 245 | 266 | IPR005539 | GO:0003677 | |
Cla05g01810 | 363 | SMART | HOX_1 | 267 | 332 | IPR001356 | GO:0003677 | |
Cla05g01810 | 363 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cla05g01810 | 363 | SMART | KNOX2_2 | 152 | 203 | IPR005541 | GO:0003677|GO:0005634 | |
Cla05g01810 | 363 | SMART | KNOX1_2 | 101 | 145 | IPR005540 | GO:0003677|GO:0005634 | |
Cla05g01810 | 363 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 355 | - | - | |
Cla05g01810 | 363 | ProSitePatterns | 'Homeobox' domain signature. | 303 | 326 | IPR017970 | GO:0000981|GO:0006355 | |
Cla05g01810 | 363 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 355 | - | - | |
Cla05g01810 | 363 | Pfam | Homeobox KN domain | 285 | 324 | IPR008422 | GO:0003677|GO:0006355 | |
Cla05g01810 | 363 | MobiDBLite | consensus disorder prediction | 212 | 241 | - | - | |
Cla05g01810 | 363 | SUPERFAMILY | Homeodomain-like | 266 | 341 | IPR009057 | - | |
Cla05g01810 | 363 | ProSiteProfiles | 'Homeobox' domain profile. | 265 | 328 | IPR001356 | GO:0003677 | |
Cla05g01810 | 363 | CDD | homeodomain | 277 | 329 | IPR001356 | GO:0003677 | |
Cla05g01810 | 363 | Pfam | KNOX2 domain | 157 | 202 | IPR005541 | GO:0003677|GO:0005634 | |
Cla05g01810 | 363 | ProSiteProfiles | ELK domain profile. | 245 | 265 | IPR005539 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01810 | Cla08g01650 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00217 | Cla-Chr2:2237529 | Cla05g01810 | Cla-Chr5:30014939 | 1.28E-85 | dispersed | |
Cla02g01473 | Cla-Chr2:29270434 | Cla05g01810 | Cla-Chr5:30014939 | 7.19E-64 | dispersed | |
Cla05g01707 | Cla-Chr5:28846938 | Cla05g01810 | Cla-Chr5:30014939 | 2.89E-28 | dispersed | |
Cla05g01810 | Cla-Chr5:30014939 | Cla05g02558 | Cla-Chr5:36873530 | 1.91E-71 | dispersed | |
Cla05g01810 | Cla-Chr5:30014939 | Cla08g01650 | Cla-Chr8:29144261 | 1.44E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61118 | PF03791 | KNOX2 | 3.20E-25 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01810 | - | - | csv:101213104 | 634.795 |