Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01810 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGAACAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA 1092 46.15 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30014939 30019832 - ClCG05G017660.1 Cla05g01810 273300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01810 363 Pfam ELK domain 245 266 IPR005539 GO:0003677
Cla05g01810 363 Gene3D - 270 332 - -
Cla05g01810 363 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677|GO:0005634
Cla05g01810 363 SMART ELK_2 161 181 IPR005539 GO:0003677
Cla05g01810 363 SMART ELK_2 245 266 IPR005539 GO:0003677
Cla05g01810 363 SMART HOX_1 267 332 IPR001356 GO:0003677
Cla05g01810 363 MobiDBLite consensus disorder prediction 1 20 - -
Cla05g01810 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677|GO:0005634
Cla05g01810 363 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Cla05g01810 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 355 - -
Cla05g01810 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Cla05g01810 363 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 355 - -
Cla05g01810 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Cla05g01810 363 MobiDBLite consensus disorder prediction 212 241 - -
Cla05g01810 363 SUPERFAMILY Homeodomain-like 266 341 IPR009057 -
Cla05g01810 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Cla05g01810 363 CDD homeodomain 277 329 IPR001356 GO:0003677
Cla05g01810 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677|GO:0005634
Cla05g01810 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01810 Cla08g01650 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00217 Cla-Chr2:2237529 Cla05g01810 Cla-Chr5:30014939 1.28E-85 dispersed
Cla02g01473 Cla-Chr2:29270434 Cla05g01810 Cla-Chr5:30014939 7.19E-64 dispersed
Cla05g01707 Cla-Chr5:28846938 Cla05g01810 Cla-Chr5:30014939 2.89E-28 dispersed
Cla05g01810 Cla-Chr5:30014939 Cla05g02558 Cla-Chr5:36873530 1.91E-71 dispersed
Cla05g01810 Cla-Chr5:30014939 Cla08g01650 Cla-Chr8:29144261 1.44E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61118 PF03791 KNOX2 3.20E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01810 - - csv:101213104 634.795