Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01812 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCAGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCGCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACAGGACTCAACCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTCAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1050 51.24 MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30072712 30073761 + ClCG05G017680.1 Cla05g01812 273302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01812 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Cla05g01812 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 348 - -
Cla05g01812 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Cla05g01812 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Cla05g01812 349 Gene3D - 111 185 - -
Cla05g01812 349 PANTHER UNKEMPT FAMILY MEMBER 8 348 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01812 Cla-Chr5:30072712 Cla11g00173 Cla-Chr11:2031284 2.18E-102 dispersed
Cla07g01625 Cla-Chr7:33584932 Cla05g01812 Cla-Chr5:30072712 4.94E-10 transposed
Cla03g01526 Cla-Chr3:30903917 Cla05g01812 Cla-Chr5:30072712 2.27E-111 wgd
Cla05g01812 Cla-Chr5:30072712 Cla08g01651 Cla-Chr8:29168801 8.80E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61119 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01812 - - csv:101205433 671.774