Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01817 | ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTGTGTGTGTGGGATTCAGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGCGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATTTTGTGAGCAATATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGAAATCAAAGTTGAAGAAAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACAGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGCTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCCTTCTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCTGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCTTAGAACCGGCGTTCTCCGTCGTCGGTCAGGCCATGTCCGGGACCGGGAAAGAAGTAATTCAAGGCTGCAGGCTTTTCTAG | 1008 | 47.92 | MGICISSASSQIRHETNKVGSVLEEDYCKKSYCVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAAESCLFGVFDGHGQNGHFVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKEIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLLSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVLEPAFSVVGQAMSGTGKEVIQGCRLF | 335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30126378 | 30128348 | - | ClCG05G017730.1 | Cla05g01817 | 273307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01817 | 335 | ProSiteProfiles | PPM-type phosphatase domain profile. | 40 | 314 | IPR001932 | - | |
| Cla05g01817 | 335 | Pfam | Protein phosphatase 2C | 44 | 292 | IPR001932 | - | |
| Cla05g01817 | 335 | Gene3D | - | 39 | 314 | IPR036457 | - | |
| Cla05g01817 | 335 | CDD | PP2Cc | 42 | 276 | IPR001932 | - | |
| Cla05g01817 | 335 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 309 | - | - | |
| Cla05g01817 | 335 | ProSitePatterns | PPM-type phosphatase domain signature. | 71 | 79 | IPR000222 | GO:0043169 | |
| Cla05g01817 | 335 | SMART | PP2C_4 | 24 | 317 | IPR001932 | - | |
| Cla05g01817 | 335 | PANTHER | PROTEIN PHOSPHATASE 2C 72-RELATED | 1 | 309 | - | - | |
| Cla05g01817 | 335 | SUPERFAMILY | PP2C-like | 41 | 310 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01817 | Cla-Chr5:30126378 | Cla11g00927 | Cla-Chr11:16035128 | 2.95E-90 | dispersed | |
| Cla06g00528 | Cla-Chr6:6360444 | Cla05g01817 | Cla-Chr5:30126378 | 6.67E-29 | dispersed | |
| Cla05g01817 | Cla-Chr5:30126378 | Cla02g00118 | Cla-Chr2:1360519 | 2.21E-92 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01817 | - | - | csv:101214070 | 478.404 |