Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01823 ATGAATGAAAGCCGATCGCAGCTCCTTTTACTTCCAAACCAACTTGACCCTTATGGTTTGATGCTTTCAGAATCAATCGAACGGTTTTTCGATGAATATCAAAAAGGGGTTACTGATTTCTCTAGTTTCATTCCCATTTTCTCTCGTTTGCTCAGAAATTTGCCCGACCCACCGGTGGCCGTCGTGTGGTTTTACTCTGCTCTGAAGTTTCACACCGCTAAATCCTCAGCCAGAGGTTCTTCGGAGAAGCTGCTTGTAGTTAAGGATTTATTCCAACTTCTTGTTTCTTGCACGGCGTCGTCCTGTGCATCGAAAAGAATCGCCGTGCTGGCCCCGGTTATCTACTGTCTGTTCGATTTAGTTGTCGAGAAGAAAACGTCCAAGGAGGAGGCTGAGAATTTGATCGACGGGGTTGTTAGTTATATCAGTATTTGTTGTGGTCAAGAGTCCAAGGAAGACGGTTGTTCCTTGGGGTTTGATCCTTATTTTCTGGATTTGGCCCGTGTCTGGATGGTGGACAAACCTGGAGAAGAATTGAAGGGTTTTCTCCCACTTGTTAGCCATGAAATTTGTCAAGGCATCAGTGTCAACGGTGGGGTGGGCTACTTTGCTGGGATCGTTATGTTTGAAGCCTTTTTGTTGAGGCTGTGCTTGAAATTCTCTTCTCGGATGTCAATGGTTGAACTGCAAAATGAACTCCACAGCCGAGCGGTCCAAATGATTGCTGGGTTTCGTAGTTGTCACTTCTATGATATTTTCCTCAGGATGCTGCTGCAGTCAGTTTTGCCAACTACATATTTGTTGTTTGAGGTTCTGCAACTCTGCTACTATCCATCAGATACGCCATACACGCCCATGCGTTCTGCTGATGAAGTCATTCTGCGAGAAGTATTATATGATGCTGCAATAATACCAGAGTATCCATTCCTCAAACTTCAATTTGGAATTGAAAGACCTGCTGCCGATTTAAGAGCTATTTGTTTGAATTGGTTATTTGTTGCTGATAATGGTATTCGATCCTTTAGAGACACTGGAAATCTGAGTAAGGCTATGTCCTACATAAATGCCTTCCGCAATACTTGTTGGCCCTCTCAGTTGATCAATTGGATCAGAAACCAGCCAGGCTTCAGCGAGAGGATGAGTCAACCAAACATCTCCACACCCACGGCTCTTATCGAATGGCTTCTGGTATTGGAAGATCAAGGGGTGAGAGTGTTCGACCATTTGAACTCCAAGTTAAGAGCCAGAGAAATCATTTGCAAGTCAGGAGCTGAATTTCTACAACCAGCAAAAGTTTCAGATGGCAAGAACCTAGATGTTAATTTCTTTAATAATGCCACAAATGTGATGGATGAAGATCCCTCTGTTGGTGACTTTGACATGGTTGATTCAATGGCTACAGCAGCAGTACAGGCAACATCCATCACCTTAAATGGAAATGGGATTGAAAATGGAAGAAAAAGGAAGGAATGCATGAATGACAAAGGGGACATGAGGGTAAAGTTCCTTAGGCAACATCTCCATGACAATCCACTCAGAGAGAAATCTTTGCCATTGGTTTGA 1563 43.57 MNESRSQLLLLPNQLDPYGLMLSESIERFFDEYQKGVTDFSSFIPIFSRLLRNLPDPPVAVVWFYSALKFHTAKSSARGSSEKLLVVKDLFQLLVSCTASSCASKRIAVLAPVIYCLFDLVVEKKTSKEEAENLIDGVVSYISICCGQESKEDGCSLGFDPYFLDLARVWMVDKPGEELKGFLPLVSHEICQGISVNGGVGYFAGIVMFEAFLLRLCLKFSSRMSMVELQNELHSRAVQMIAGFRSCHFYDIFLRMLLQSVLPTTYLLFEVLQLCYYPSDTPYTPMRSADEVILREVLYDAAIIPEYPFLKLQFGIERPAADLRAICLNWLFVADNGIRSFRDTGNLSKAMSYINAFRNTCWPSQLINWIRNQPGFSERMSQPNISTPTALIEWLLVLEDQGVRVFDHLNSKLRAREIICKSGAEFLQPAKVSDGKNLDVNFFNNATNVMDEDPSVGDFDMVDSMATAAVQATSITLNGNGIENGRKRKECMNDKGDMRVKFLRQHLHDNPLREKSLPLV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30150315 30153982 + ClCG05G017780.1 Cla05g01823 273313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01823 520 PANTHER SNF2 DOMAIN PROTEIN 12 519 - -
Cla05g01823 520 PANTHER OS01G0600300 PROTEIN 12 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01823 - - - csv:101207241 938.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01515 Cla-Chr3:30763776 Cla05g01823 Cla-Chr5:30150315 6.31E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g65 . . . . . . . . . . Cma01g01742 . Car09g00279 . . . Cpe06g00235 . . . . . . . Cla05g01823 Cam05g1945 Cec05g1958 Cco05g2018 Clacu05g1937 Cmu05g1818 Cre05g1944 . . . . Lsi04g01434 . . . . . . . . . . . Sed11g1840 Cmo01g01770 . Cma09g00330 . Car01g01354 . . Cpe02g00255 Bhi09g03168 Tan01g4641 Cmetu02g0525 . Hepe01g1872 Mch11g0406 . . . . . . . . . . . Cme07g00233
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010802 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 2 1 32