Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01835 | ATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTGCCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCCAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTATTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATAAATGATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATCAATATGTGGGCATCGGGGTTTCGAGATTGGACGGAGAAAGAAAGCCCAAGAGGCCCAAATGGAACTAAAAAGGCCTAAAAAGTTGGGTTGGGGAAATAAAGGCCGAAAGGCCCGATTCAAGCAGGAGCTGAGAATTGGCTCGGGGAAGGAGAAGAAGGTCACAGGATTGAGAATCGCAAAGATCCGACCATTTTCGTCTTCGGATAACGAATGGCTTGGAGGCATCTCATCACCCGGGGCGGCAGCACAGCTTCCTTTCATTTCCTCGTTGCTAGTTTCTAAGGTTTCGAGGAATAATTTAGAGTTGGGACAGTTAAAGAATGCGTTGATTAATACATATTTACCCGTCAATCGGGGCGGGCTTTTTTCTTTCAACCCTTACAACCATACACGCGTTTGTGGTGGTGAGCATGAAGTCAATTTCAAATTGCTGGAAATAAGTTTATTTGCTTCTTCTCCTGATTGCTATGCAGTATATAAATTCTTGGCGGCTCAGGAGAGATATCAATCAAGCTATGTTGGGAACCTAGCTCGTAGAGTGCGGGATGCCGACGAGGCTAGTGAAGTTGCTCATCTGAAAGAACTATGCCGTCGAAATGATCCTGAAGCTGTTATAAGATTATTTGAAACTCAGCCATCATTGCACCACAATGCTACTGCACTTTCTGAATATGTTAAAGCATTGGTGAAAGTCGACAGACTGGATGAGAGTGAACTGCTTAAGACATTGCAGAGAGGTGAGCATACTACTTCTATATTGTTTGGTCAATTCATCAGAAATTACTTCTGTTTAGGTGGTATCGTGATAGTTTTCGTTGTTCTAATGCTGAATGAAACTGCTCGTGCATGCATTTCAAGTGTGTCTAGGGGAGAAGAAAGCGTTGGTAGCATAGCGGCTTTCAGAAATGTTGGAAAACAGTCAAAAGAAGGTATTCTTGGAACCTCAAGTTCTCCTATCCATATGGTGGCTACTGAAGGTGGCCACTTTAAGGAGCAGCTCTGGAGGACGATTCGCACTATTGCATTGGCCTTTCTCTTAATTTCGGGTATAGGAGCACTCATTGAGGATAGAGGAATTAGCAAAGGTTGGTTTCTCTGTCTTGGTTTGAATGAAGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTTAAGGGTGTTGATGAAGCTAAGGCAGAACTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGATTCACTCGTTTGGGTGGCAAGCTCCCAAAAGGTGTTCTGCTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCGATTGCTGGAGAAGCTGGGGTACCATTCTTCTCCTGCAGTGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTATTTTCTGCTGCAAAGAAGCGGTCACCATGTATTATTTTCATTGATGAGATTGATGCCATTGGAGGAAGCCGAAACCCCAAGGATCAACAGTATATGAAAATGACCCTTAACCAGTTACTTGTTGAACTTGATGGCTTTAAGCAAAATGAAGGAATAATTGTCATTGCAGCGACAAACTTTCCAGAGTCTTTGGACAAGGCATTAGTAAGACCTGGTCGATTTGATCGCCACATTGTTGTACCTAATCCTGATGTTGAAGGACGAAGACAAATCCTGGAATCACATATGTCAAAGATATTGAAGGCAGATGACGTTGATATGATGATCATTGCAAGGGGAACTCCTGGTTTTTCTGGTGCCGATCTTGCAAATTTAGTTAATATTGCTGCTTTGAAGGCTGCGATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTAGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCAGCTGTTATTTCTGATGAGTCACGAAAATTGACTGCATTTCATGAAGGTGGCCACGCCCTTGTGGCAATTCACACTGATGGCGCGCTCCCAGTTCACAAGGCCACAATTGTTCCGAGAGGAATGGCTCTTGGCATGGTCGCACAGTTGCCTGATAAGGACGAAACTAGTGTCTCCCGCAAACAGATGCTTGCTCGCCTCGATGTTTGCATGGGAGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAACGAAGTAACTTCTGGTGCTTCATCTGATTTGCAGCAAGCAACTTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTCGGGCTTGTCGCCCACAATTACGATGACAATGGGAAAAGCATGAGTACAGAAACAAGACTTCTGATTGAAAAGGAAGTGAAGAACTTCTTAGAAGCGGCCTACACCAACGCAAAAACAATTCTCACTACCCATAACAAGGAGCTCCATGCCCTGGCGAATGCTTTGCTTGAACAAGAGACACTCTCTGGTAGTCAGATCATGGCTCTTCTTGCACAGGTAAACTCCCAGCAGCAGCAGCAGCAGCAGCAACATCAACAATTAGTTTCCACACAGAGTAGCTCGCAGTCCAGCCCTGTGCCACCCTCAGCGCCGAACCCTGCTGCATCTGCAGCCGCTGCAGCAGCAGCAGCTGCTGCGGCAGCAACTGCCGCAGCCAAAGCTAAAGGCATTGCTCCTGTTGGATCTTAG | 3858 | 44.69 | MMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEINDNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTSICGHRGFEIGRRKKAQEAQMELKRPKKLGWGNKGRKARFKQELRIGSGKEKKVTGLRIAKIRPFSSSDNEWLGGISSPGAAAQLPFISSLLVSKVSRNNLELGQLKNALINTYLPVNRGGLFSFNPYNHTRVCGGEHEVNFKLLEISLFASSPDCYAVYKFLAAQERYQSSYVGNLARRVRDADEASEVAHLKELCRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGEHTTSILFGQFIRNYFCLGGIVIVFVVLMLNETARACISSVSRGEESVGSIAAFRNVGKQSKEGILGTSSSPIHMVATEGGHFKEQLWRTIRTIALAFLLISGIGALIEDRGISKGWFLCLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEKEVKNFLEAAYTNAKTILTTHNKELHALANALLEQETLSGSQIMALLAQVNSQQQQQQQQHQQLVSTQSSSQSSPVPPSAPNPAASAAAAAAAAAAAATAAAKAKGIAPVGS | 1285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30246261 | 30256411 | - | ClCG05G017905.1 | Cla05g01835 | 273325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01835 | 1285 | Gene3D | - | 777 | 958 | IPR027417 | - | |
Cla05g01835 | 1285 | Pfam | AAA+ lid domain | 980 | 1023 | IPR041569 | - | |
Cla05g01835 | 1285 | CDD | AAA | 795 | 957 | - | - | |
Cla05g01835 | 1285 | MobiDBLite | consensus disorder prediction | 1230 | 1259 | - | - | |
Cla05g01835 | 1285 | MobiDBLite | consensus disorder prediction | 29 | 78 | - | - | |
Cla05g01835 | 1285 | Gene3D | - | 959 | 1032 | - | - | |
Cla05g01835 | 1285 | Pfam | Peptidase family M41 | 1039 | 1218 | IPR000642 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cla05g01835 | 1285 | PANTHER | ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE | 694 | 1257 | - | - | |
Cla05g01835 | 1285 | ProSitePatterns | AAA-protein family signature. | 928 | 946 | IPR003960 | GO:0005524|GO:0016887 | |
Cla05g01835 | 1285 | SUPERFAMILY | FtsH protease domain-like | 1039 | 1224 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cla05g01835 | 1285 | PANTHER | METALLOPROTEASE M41 FTSH | 572 | 657 | - | - | |
Cla05g01835 | 1285 | SMART | c2h2final6 | 170 | 190 | IPR013087 | - | |
Cla05g01835 | 1285 | SMART | c2h2final6 | 94 | 116 | IPR013087 | - | |
Cla05g01835 | 1285 | Hamap | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 1 | 1252 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Cla05g01835 | 1285 | Gene3D | Peptidase M41 | 1033 | 1232 | IPR037219 | GO:0004176|GO:0004222|GO:0005524|GO:0006508 | |
Cla05g01835 | 1285 | PANTHER | ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE | 572 | 657 | - | - | |
Cla05g01835 | 1285 | SUPERFAMILY | beta-beta-alpha zinc fingers | 93 | 190 | IPR036236 | - | |
Cla05g01835 | 1285 | Gene3D | Classic Zinc Finger | 92 | 191 | - | - | |
Cla05g01835 | 1285 | MobiDBLite | consensus disorder prediction | 29 | 46 | - | - | |
Cla05g01835 | 1285 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 96 | 116 | IPR013087 | - | |
Cla05g01835 | 1285 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 94 | 116 | IPR013087 | - | |
Cla05g01835 | 1285 | Pfam | ATPase family associated with various cellular activities (AAA) | 828 | 957 | IPR003959 | GO:0005524|GO:0016887 | |
Cla05g01835 | 1285 | TIGRFAM | FtsH_fam: ATP-dependent metallopeptidase HflB | 780 | 1220 | IPR005936 | GO:0004176|GO:0004222|GO:0016020 | |
Cla05g01835 | 1285 | PANTHER | METALLOPROTEASE M41 FTSH | 694 | 1257 | - | - | |
Cla05g01835 | 1285 | MobiDBLite | consensus disorder prediction | 1230 | 1248 | - | - | |
Cla05g01835 | 1285 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 788 | 1044 | IPR027417 | - | |
Cla05g01835 | 1285 | SMART | AAA_5 | 824 | 960 | IPR003593 | - | |
Cla05g01835 | 1285 | MobiDBLite | consensus disorder prediction | 47 | 69 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00055 | Cla-Chr1:463529 | Cla05g01835 | Cla-Chr5:30246261 | 0 | dispersed | |
Cla05g01835 | Cla-Chr5:30246261 | Cla09g01781 | Cla-Chr9:35196857 | 2.66E-129 | dispersed | |
Cla05g01835 | Cla-Chr5:30246261 | Cla02g01954 | Cla-Chr2:34634362 | 1.35E-109 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61121 | PF01434 | Peptidase_M41 | 1.60E-66 | CL0126 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01835 | K08955 | - | csv:101209284 | 1159.82 |