Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01835 ATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTGCCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCCAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTATTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATAAATGATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATCAATATGTGGGCATCGGGGTTTCGAGATTGGACGGAGAAAGAAAGCCCAAGAGGCCCAAATGGAACTAAAAAGGCCTAAAAAGTTGGGTTGGGGAAATAAAGGCCGAAAGGCCCGATTCAAGCAGGAGCTGAGAATTGGCTCGGGGAAGGAGAAGAAGGTCACAGGATTGAGAATCGCAAAGATCCGACCATTTTCGTCTTCGGATAACGAATGGCTTGGAGGCATCTCATCACCCGGGGCGGCAGCACAGCTTCCTTTCATTTCCTCGTTGCTAGTTTCTAAGGTTTCGAGGAATAATTTAGAGTTGGGACAGTTAAAGAATGCGTTGATTAATACATATTTACCCGTCAATCGGGGCGGGCTTTTTTCTTTCAACCCTTACAACCATACACGCGTTTGTGGTGGTGAGCATGAAGTCAATTTCAAATTGCTGGAAATAAGTTTATTTGCTTCTTCTCCTGATTGCTATGCAGTATATAAATTCTTGGCGGCTCAGGAGAGATATCAATCAAGCTATGTTGGGAACCTAGCTCGTAGAGTGCGGGATGCCGACGAGGCTAGTGAAGTTGCTCATCTGAAAGAACTATGCCGTCGAAATGATCCTGAAGCTGTTATAAGATTATTTGAAACTCAGCCATCATTGCACCACAATGCTACTGCACTTTCTGAATATGTTAAAGCATTGGTGAAAGTCGACAGACTGGATGAGAGTGAACTGCTTAAGACATTGCAGAGAGGTGAGCATACTACTTCTATATTGTTTGGTCAATTCATCAGAAATTACTTCTGTTTAGGTGGTATCGTGATAGTTTTCGTTGTTCTAATGCTGAATGAAACTGCTCGTGCATGCATTTCAAGTGTGTCTAGGGGAGAAGAAAGCGTTGGTAGCATAGCGGCTTTCAGAAATGTTGGAAAACAGTCAAAAGAAGGTATTCTTGGAACCTCAAGTTCTCCTATCCATATGGTGGCTACTGAAGGTGGCCACTTTAAGGAGCAGCTCTGGAGGACGATTCGCACTATTGCATTGGCCTTTCTCTTAATTTCGGGTATAGGAGCACTCATTGAGGATAGAGGAATTAGCAAAGGTTGGTTTCTCTGTCTTGGTTTGAATGAAGAAGTGCAACCTAGCATGGAATCTAATACAAAATTCAATGATGTTAAGGGTGTTGATGAAGCTAAGGCAGAACTTGAAGAAATTGTTCACTACCTTCGAGATCCCAAGCGATTCACTCGTTTGGGTGGCAAGCTCCCAAAAGGTGTTCTGCTTGTTGGTCCACCTGGAACTGGCAAGACAATGTTAGCAAGAGCGATTGCTGGAGAAGCTGGGGTACCATTCTTCTCCTGCAGTGGCAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGGGCTAGAAGAGTGAGGGATTTATTTTCTGCTGCAAAGAAGCGGTCACCATGTATTATTTTCATTGATGAGATTGATGCCATTGGAGGAAGCCGAAACCCCAAGGATCAACAGTATATGAAAATGACCCTTAACCAGTTACTTGTTGAACTTGATGGCTTTAAGCAAAATGAAGGAATAATTGTCATTGCAGCGACAAACTTTCCAGAGTCTTTGGACAAGGCATTAGTAAGACCTGGTCGATTTGATCGCCACATTGTTGTACCTAATCCTGATGTTGAAGGACGAAGACAAATCCTGGAATCACATATGTCAAAGATATTGAAGGCAGATGACGTTGATATGATGATCATTGCAAGGGGAACTCCTGGTTTTTCTGGTGCCGATCTTGCAAATTTAGTTAATATTGCTGCTTTGAAGGCTGCGATGGATGGTGCTAAAGCAGTGAGCATGGATGATCTAGAATTTGCAAAGGACAAGATTATGATGGGAAGTGAGCGCAAGTCAGCTGTTATTTCTGATGAGTCACGAAAATTGACTGCATTTCATGAAGGTGGCCACGCCCTTGTGGCAATTCACACTGATGGCGCGCTCCCAGTTCACAAGGCCACAATTGTTCCGAGAGGAATGGCTCTTGGCATGGTCGCACAGTTGCCTGATAAGGACGAAACTAGTGTCTCCCGCAAACAGATGCTTGCTCGCCTCGATGTTTGCATGGGAGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAACGAAGTAACTTCTGGTGCTTCATCTGATTTGCAGCAAGCAACTTCTCTTGCTAGAGCTATGGTTACCAAGTATGGAATGAGCAAAGAAGTCGGGCTTGTCGCCCACAATTACGATGACAATGGGAAAAGCATGAGTACAGAAACAAGACTTCTGATTGAAAAGGAAGTGAAGAACTTCTTAGAAGCGGCCTACACCAACGCAAAAACAATTCTCACTACCCATAACAAGGAGCTCCATGCCCTGGCGAATGCTTTGCTTGAACAAGAGACACTCTCTGGTAGTCAGATCATGGCTCTTCTTGCACAGGTAAACTCCCAGCAGCAGCAGCAGCAGCAGCAACATCAACAATTAGTTTCCACACAGAGTAGCTCGCAGTCCAGCCCTGTGCCACCCTCAGCGCCGAACCCTGCTGCATCTGCAGCCGCTGCAGCAGCAGCAGCTGCTGCGGCAGCAACTGCCGCAGCCAAAGCTAAAGGCATTGCTCCTGTTGGATCTTAG 3858 44.69 MMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEINDNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTSICGHRGFEIGRRKKAQEAQMELKRPKKLGWGNKGRKARFKQELRIGSGKEKKVTGLRIAKIRPFSSSDNEWLGGISSPGAAAQLPFISSLLVSKVSRNNLELGQLKNALINTYLPVNRGGLFSFNPYNHTRVCGGEHEVNFKLLEISLFASSPDCYAVYKFLAAQERYQSSYVGNLARRVRDADEASEVAHLKELCRRNDPEAVIRLFETQPSLHHNATALSEYVKALVKVDRLDESELLKTLQRGEHTTSILFGQFIRNYFCLGGIVIVFVVLMLNETARACISSVSRGEESVGSIAAFRNVGKQSKEGILGTSSSPIHMVATEGGHFKEQLWRTIRTIALAFLLISGIGALIEDRGISKGWFLCLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKADDVDMMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVSMDDLEFAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATSLARAMVTKYGMSKEVGLVAHNYDDNGKSMSTETRLLIEKEVKNFLEAAYTNAKTILTTHNKELHALANALLEQETLSGSQIMALLAQVNSQQQQQQQQHQQLVSTQSSSQSSPVPPSAPNPAASAAAAAAAAAAAATAAAKAKGIAPVGS 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30246261 30256411 - ClCG05G017905.1 Cla05g01835 273325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01835 1285 Gene3D - 777 958 IPR027417 -
Cla05g01835 1285 Pfam AAA+ lid domain 980 1023 IPR041569 -
Cla05g01835 1285 CDD AAA 795 957 - -
Cla05g01835 1285 MobiDBLite consensus disorder prediction 1230 1259 - -
Cla05g01835 1285 MobiDBLite consensus disorder prediction 29 78 - -
Cla05g01835 1285 Gene3D - 959 1032 - -
Cla05g01835 1285 Pfam Peptidase family M41 1039 1218 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cla05g01835 1285 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 694 1257 - -
Cla05g01835 1285 ProSitePatterns AAA-protein family signature. 928 946 IPR003960 GO:0005524|GO:0016887
Cla05g01835 1285 SUPERFAMILY FtsH protease domain-like 1039 1224 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cla05g01835 1285 PANTHER METALLOPROTEASE M41 FTSH 572 657 - -
Cla05g01835 1285 SMART c2h2final6 170 190 IPR013087 -
Cla05g01835 1285 SMART c2h2final6 94 116 IPR013087 -
Cla05g01835 1285 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 1252 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cla05g01835 1285 Gene3D Peptidase M41 1033 1232 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cla05g01835 1285 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 572 657 - -
Cla05g01835 1285 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Cla05g01835 1285 Gene3D Classic Zinc Finger 92 191 - -
Cla05g01835 1285 MobiDBLite consensus disorder prediction 29 46 - -
Cla05g01835 1285 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Cla05g01835 1285 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cla05g01835 1285 Pfam ATPase family associated with various cellular activities (AAA) 828 957 IPR003959 GO:0005524|GO:0016887
Cla05g01835 1285 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 780 1220 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cla05g01835 1285 PANTHER METALLOPROTEASE M41 FTSH 694 1257 - -
Cla05g01835 1285 MobiDBLite consensus disorder prediction 1230 1248 - -
Cla05g01835 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1044 IPR027417 -
Cla05g01835 1285 SMART AAA_5 824 960 IPR003593 -
Cla05g01835 1285 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00055 Cla-Chr1:463529 Cla05g01835 Cla-Chr5:30246261 0 dispersed
Cla05g01835 Cla-Chr5:30246261 Cla09g01781 Cla-Chr9:35196857 2.66E-129 dispersed
Cla05g01835 Cla-Chr5:30246261 Cla02g01954 Cla-Chr2:34634362 1.35E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61121 PF01434 Peptidase_M41 1.60E-66 CL0126 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01835 K08955 - csv:101209284 1159.82