Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01841 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTATGAGTTTGACAAGAACAATTCGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNSGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30295536 30297660 - ClCG05G017970.1 Cla05g01841 273331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01841 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Cla05g01841 445 Pfam Protein of unknown function (DUF4005) 336 422 IPR025064 -
Cla05g01841 445 MobiDBLite consensus disorder prediction 1 31 - -
Cla05g01841 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 307 326 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 12 30 - -
Cla05g01841 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Cla05g01841 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Cla05g01841 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Cla05g01841 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cla05g01841 445 SMART iq_5 112 133 IPR000048 GO:0005515
Cla05g01841 445 SMART iq_5 89 111 IPR000048 GO:0005515
Cla05g01841 445 MobiDBLite consensus disorder prediction 410 424 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01841 - - - csv:101210019 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01841 Cla-Chr5:30295536 Cla09g01991 Cla-Chr9:37477381 1.58E-47 dispersed
Cla08g01436 Cla-Chr8:27221111 Cla05g01841 Cla-Chr5:30295536 1.54E-14 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla05g01841 Cla-Chr5:30295536 1.00E-56 transposed
Cla05g01841 Cla-Chr5:30295536 Cla09g00069 Cla-Chr9:665191 1.59E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01991 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Cla03g01150 . 73 480 IQD Protein Family AT3G22190 57.8 3.4e-97 352.4
Cla05g01841 . 1 438 IQD Protein Family AT2G26180 61.6 4.0e-119 425.2
Cla07g00945 . 106 281 IQD Protein Family AT2G33990 55.3 3.1e-48 189.1
Cla07g00945 . 109 283 IQD Protein Family AT3G15050 62.4 7.5e-55 211.1
Cla01g00741 . 121 476 IQD Protein Family AT5G13460 50.3 1.6e-73 273.9
Cla06g00255 . 1 509 IQD Protein Family AT4G00820 51.4 7.8e-115 411.4
Cla06g00255 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39