Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01841 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTATGAGTTTGACAAGAACAATTCGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNSGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30295536 30297660 - ClCG05G017970.1 Cla05g01841 273331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01841 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Cla05g01841 445 Pfam Protein of unknown function (DUF4005) 336 422 IPR025064 -
Cla05g01841 445 MobiDBLite consensus disorder prediction 1 31 - -
Cla05g01841 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 307 326 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 12 30 - -
Cla05g01841 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Cla05g01841 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Cla05g01841 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Cla05g01841 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cla05g01841 445 SMART iq_5 112 133 IPR000048 GO:0005515
Cla05g01841 445 SMART iq_5 89 111 IPR000048 GO:0005515
Cla05g01841 445 MobiDBLite consensus disorder prediction 410 424 - -
Cla05g01841 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01841 Cla-Chr5:30295536 Cla09g01991 Cla-Chr9:37477381 1.58E-47 dispersed
Cla08g01436 Cla-Chr8:27221111 Cla05g01841 Cla-Chr5:30295536 1.54E-14 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla05g01841 Cla-Chr5:30295536 1.00E-56 transposed
Cla05g01841 Cla-Chr5:30295536 Cla09g00069 Cla-Chr9:665191 1.59E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01841 - - csv:101210019 801.586