Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01845 ATGGAGACCGAGAATGCAGATGAGCTCGCATCGTCGACGGCTTCCACTCTCCTTCCACTCGCCTCCGCCGCGCAGCAGCCATACGTGTCGGAGCTCCTTTCTTTCACCCTCGATCGTCTAAACAAGGAACCGGAGCTTCTTCAGGTGGATGCGGAGCGAATTCGGAGGCAAATACAAGAGGTGGCAGTGGGCAACTACCGAGCTTTCATTGCCGCCGCCGATGCGTTGCTTGCAATTCGAGAAGAAGTATCTTCCATTGATAAGCATCTTGAATCCTTGATATCTGAGATTCCAAATTTGACATCGGGTTGCACAGAGTTTGTTGAATCTGCGGAACAGATTCTGGAGAAGAGGAAGATGAACCAAATATTGCTAACACATCACAGTACTCTGCTTGATTTACTTGAAATTCCTCAGCTTATGGACACGTGTGTAAGAAATGGAAATTATGATGAAGCTCTTGACTTGGAAGCGTTTGTTGCAAAACTTTCAACCATGCACCCTAAAATACCAGTAATTCAAGCACTAGTGGCAGAAGTCAGGCGAACCACCCAATCTCTTCTTTCTCAACTTCTCCAAAAACTTCGCTCAAATATTCAGTTACCTGAATGTCTCCGCATCATTGGATATCTTCGTCGAATTGGAGTGTTTAGTGAATATGAAATGCGTTTACAGTTTTTAAGATGCCGAGAGGCATGGCTTACTGGAATTCTCGAAGATCTTGACCAGAGAAATGCTTATGAATATTTGAAAGGAATGATCAATTGTCACAGGACACATCTCTTTGATGTTGTTAACCAATATCGAGCTATATTTGCTGATGATACATCCGGAAGTGAAGAAAATTATGACAGTGGGCTTCTTTTTAGTTGGTCTATGCATCAGATAACTTCTCATCTGAAAACGCTCAAAATAATGCTCCCAAAAATAACAGAAGGTGGATCTCTATCAAATATATTGGAACAGTGCATGTACTGTGCTGTGGGGCTTGGCTGGGTTGGAATGGATTTTCGTGGTTTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTCAATTTATTTTCAAAAAATATGGGTACTGCAGTTGATAATTTTCAGTTAGTTCTGGATTCCCATCGTTGGGTTCCACTACCAGCCGTTGGCTTTCCAGCAAGTACTATTGGTGAGGAAAGTCAGGAAGACGTGACTCCACCTTCGTATTTGATGGAACATCCACCTCTTGCTGTTTTTGTGAATGCTATGAATGAACTTCGCCATTGTGCCCCTTTGAGTTTGAAACATGTAATAGCTCAGGAATTAATAAAAGGATTGCAGGCTGTTTCTGACTCTTTATTGAGATACAACACAACTCGCATGCTAAAAGATAATGAATCTGGACTTTTCCTCCAGCTTTGCCGGGCATTCATAGAGGTTGCTTATCCACATTGTGCCACTTGTTTTGGCCGCTGTTATCCTGGCGGGGCAACACTTATATTGGATGCAAAGAATTTATACGATGGTATTGGTCGCTTACTGACTGTCTCTTCCTCGAGAGAACTCCCGAAAACAGTCAGTACCGTCGAAGAGAAAAACGTTACAGAAAATGGTGATATGGCTGCGCTGGAAAATGGAGCTACATCAGATGCTGATAAGGACCAGAAAAGCCCTTCCTTGCATAGCTCAGTGACGGTTAACCGTCGGTTTCCCGTTACCAATGGCCCTAAAACGCTGCGTTTTAAGTTCAAAAAACCCTCAGCAGAAACCCTGATTCCGCACCTCGATCTGAAGCTCAACAGTTTTGAGGGAGAGAGCATGGCTTTGAATGGAGAGCAACCTGTGGAGCAACAGCCAGAAATGCAGAAGATTCAGATATACTCTACCTCTAGTACTGGAGTTTCTCCTTTCTGGAGAGAGAAGTATGAAAAGGATGCTAAGAAGTACTGGGATATCTTTTATAAAAAGCATCAAGATCGATTTTTCAAGGACCGACACTACCTGGACAAAGAATGGGGCCAATACTTTTTTGTGAGTTCAACATGCTGCAAGGCAGAAGAAAGAAAAGTTGTTTTAGAGGTTGGCTGTGGAGCAGGAAACACTGTTTTTCCCTTGATTGCTACATATCCAAATGTTTTCATTCATGCATGTGATTTCTCACCACGAGCAGTGAATTTAGTGAAGAGACATAAAGAATTCAATGAGAGCCGTGTTGCTGCATTTGTTTGTGATCTTACTGCTGATGACTTGAGCAACCACATTTCTCCGTCATCGATAGATGTAGTAATGATGCCAACTGGACATGTTCTGTTTCGTGACTATGCAACTGGTGACCTTGCTCAGGAACGATTTGATTGCAAGGATCAAAAAATCAGTGAGAATTTTTATGTCCGAGGAGATGGAACTCGTGCTTTCTACTTCTCTAATGAGTTTCTTACAAGTACGTTTAAAGAAAATGGATTTCATGTTAAAGAACTCGGTGTGTGCTGCAAACAAGTCGAGAACCGATCAAGGGATTTGATCATGAATAGGCGATGGGTCCAAGCTGTATTCAGCCTTTCAGAGTTTGCAATTCCAGAAGCTAAACTTAGGGCAGGCTTTCCCGGTCAAGTTAAAACCGAGCCTAGGCCCAAGGAGAACCATTCAGACATGCCTGTCAACGATTTTGAACTTGACTTCTCTGAGGGTGTTGCAATCGATATGTTTGGAATTCCACCTTCTCAGGATAATGAGATTGTTGGGGTGGATGTTAGAGGATGGAATTTCAAAATTAAAGTTCTCTCGAGAGAGTTTCAACATACCTGCAAATCCACTGGTTTGATGCTGTGGGAATCTGCTCGTTTGATGGCCTCTGTCCTCGCAGAAAATCCATCCATATGTGCTGGAAAGAGGGTGTTAGAGCTGGGGTGTGGCTGTGGGGGAATCTGCTCTATGGCTGCTGTTGGCTCCGCTAATCTCGTCGTTGCCACCGATGGAGATCCGAGTGCTCTCAACCTATTATCTCAAAACGTAGCTTCAAATCTTGAGCCACATTTCCTCACCAAACTATTTACGGAGAGACTGGAGTGGGGAAATAGCATCCATGTTGAAACTATCAGAAAAATAAGCACAGGAGGTTTTGATGTCATCATAGGGACCGATGTCACCTATGTTCCGGAAGCTATTTTGCCACTATTTTCTACTGCAAAAGAGCTGATGTCATCCAGCAAGGATTCAGAATGTGCACTGATTCTTTGCCACGTCCTGCGTCGAGTTGACGAGCCAACAATTGTTTCAACTGCTCATCAATTCGGTTTTAGGTTGACTGATTCTTGGACTGCAGGAGTCTCATGCAAGTCATCACAAAGCATTGTGAGCTCTTGGTTCGCTGATAGAGATTGGGATATCCCCAGTACTGCTTTGAACATTATGTACTTCCTTTTAGATAACTGA 3402 43.36 METENADELASSTASTLLPLASAAQQPYVSELLSFTLDRLNKEPELLQVDAERIRRQIQEVAVGNYRAFIAAADALLAIREEVSSIDKHLESLISEIPNLTSGCTEFVESAEQILEKRKMNQILLTHHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVAKLSTMHPKIPVIQALVAEVRRTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGSEENYDSGLLFSWSMHQITSHLKTLKIMLPKITEGGSLSNILEQCMYCAVGLGWVGMDFRGLLPPLFEEAVLNLFSKNMGTAVDNFQLVLDSHRWVPLPAVGFPASTIGEESQEDVTPPSYLMEHPPLAVFVNAMNELRHCAPLSLKHVIAQELIKGLQAVSDSLLRYNTTRMLKDNESGLFLQLCRAFIEVAYPHCATCFGRCYPGGATLILDAKNLYDGIGRLLTVSSSRELPKTVSTVEEKNVTENGDMAALENGATSDADKDQKSPSLHSSVTVNRRFPVTNGPKTLRFKFKKPSAETLIPHLDLKLNSFEGESMALNGEQPVEQQPEMQKIQIYSTSSTGVSPFWREKYEKDAKKYWDIFYKKHQDRFFKDRHYLDKEWGQYFFVSSTCCKAEERKVVLEVGCGAGNTVFPLIATYPNVFIHACDFSPRAVNLVKRHKEFNESRVAAFVCDLTADDLSNHISPSSIDVVMMPTGHVLFRDYATGDLAQERFDCKDQKISENFYVRGDGTRAFYFSNEFLTSTFKENGFHVKELGVCCKQVENRSRDLIMNRRWVQAVFSLSEFAIPEAKLRAGFPGQVKTEPRPKENHSDMPVNDFELDFSEGVAIDMFGIPPSQDNEIVGVDVRGWNFKIKVLSREFQHTCKSTGLMLWESARLMASVLAENPSICAGKRVLELGCGCGGICSMAAVGSANLVVATDGDPSALNLLSQNVASNLEPHFLTKLFTERLEWGNSIHVETIRKISTGGFDVIIGTDVTYVPEAILPLFSTAKELMSSSKDSECALILCHVLRRVDEPTIVSTAHQFGFRLTDSWTAGVSCKSSQSIVSSWFADRDWDIPSTALNIMYFLLDN 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30341092 30352693 - ClCG05G018010.2 Cla05g01845 273335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01845 1133 Pfam Lysine methyltransferase 922 1076 IPR019410 -
Cla05g01845 1133 Pfam Methyltransferase domain 681 757 IPR041698 -
Cla05g01845 1133 Pfam Dor1-like family 29 362 IPR007255 GO:0017119
Cla05g01845 1133 CDD AdoMet_MTases 954 1056 - -
Cla05g01845 1133 SUPERFAMILY Cullin repeat-like 131 348 IPR016159 -
Cla05g01845 1133 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 626 841 IPR029063 -
Cla05g01845 1133 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 929 1058 IPR029063 -
Cla05g01845 1133 Gene3D Vaccinia Virus protein VP39 618 839 IPR029063 -
Cla05g01845 1133 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 8 521 IPR007255 GO:0017119
Cla05g01845 1133 Gene3D Vaccinia Virus protein VP39 897 1114 IPR029063 -
Cla05g01845 1133 CDD AdoMet_MTases 681 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01845 K20295 COG8; conserved oligomeric Golgi complex subunit 8 - csv:101211255 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01664 Cla-Chr2:31485344 Cla05g01845 Cla-Chr5:30341092 1.51E-06 dispersed
Cla02g02202 Cla-Chr2:37178818 Cla05g01845 Cla-Chr5:30341092 7.22E-12 dispersed
Cla05g01845 Cla-Chr5:30341092 Cla10g00191 Cla-Chr10:2163668 1.25E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38