Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01848 ATGAATGATTCCACCAACGGCAGCGTCAGGAAGAGGACAAGAGCGGACGAAGCCGATGAAGACGACGATTCAATGGGAAAAAATGGCGGAGGTAAGAGTTTGAAAGGATTGGTTACTTCTCTGTTGCTGTTGGATGAACAGGACAAGTGTGAGCAGGAAGAACATGACAGAGTTTCCATGGAGGCGAAGATTTCGATGGAGGTGAATCACCGGAAGAAGACGAAAGCCATGGTCGATTTCTACTCCGAAGTTCAAGATTACTATTCTGAAATCGATGAATCAGACCGAATGAAACGGAAAAAATCGCGATTAGCAGCCAACTCTGTTGCGGTTGCGGCCGCTTCCGATGGATTACAGAAGATGGAAATCGAAAAATCAAGCAAACGCGGCGGCGATGGCGGTGGTGGTAGCGGCCATCACCGGAGGCTCTGGGTAAAAGATAGATCAAAAGCCTGGTGGGATGAATGTAACAGTCCCGATTATCCCGATGAAGAATTCAAGAAGCAATTCAGAATGGGTAGGGCAACTTTCGATATGATTTGTGAAGAACTTAATTCCGCCATAGCTAAAGAAGACACAACTCTTCGAACCGCCATTCCCGTCCGGCAAAGAGTCGCTGTTTGCTTATGGAGATTAGCCACCGGCGATCCTCTTCGAGTCGTATCTAAGAAATTCGGATTAGGTATTTCAACTTGCCATAAACTAGTTCTTGAGGTCTGCACCGCCATTAGAACAGTACTAATGCCGAAGCATCTCCAATGGCCAGAAGAAGAAACGCTCAGAAGAATCAAAGAAGAATACGAATCAATTTCGGGAATCCCTAACGTCGTCGGTTCAATGTACACCACACACATTCCGATCATCGCCCCCAAAATCAGCGTCGCAGCTTACTTCAACAAGCGTCACACAGAGAGAAATCAAAAAACATCATACTCAATTACAGTTCAAGGAGTCGTGGATCCAAGAGGGGTTTTCACCGACGTTTGCATCGGTTGGCCGGGATCAATGCCGGACGATCAAGTTCTAGAGAAATCAGCTCTTTTTCAAAGGGCAAATGGAGGATTATTGAAAGGGGTTTGGATTGTTGGTGGATCCAGTTATCCATTATTGGACTGGGTTTTAGTACCTTATACACAGCAACATTTAACCTGGACACAACATGCTTTCAACGAGAAGATTGGAGAAATTCAGAAGGTGGCTAAAGATGCATTTGCACGGCTGAAGGGACGGTGGCGCTGTCTGCAGAAGCGGACTGAGGTGAAGCTTCAAGACTTGCCGGTGGTGCTTGGAGCTTGCTGCGTTCTTCATAATATCTGTGAATTGGGGAATGAAGAAATGGATACAGAACTCTTAACAGAGCTTCAAGATGATGAAATGGCGCCTGAAATTGCTTTGAGGTCAGTGTCTTCCATGAAAGCTAGAGATGCCATTGCTCATAATCTGCTGCACCATGGCCTTGCTGGGACTTCTTTTCTTTAA 1479 45.98 MNDSTNGSVRKRTRADEADEDDDSMGKNGGGKSLKGLVTSLLLLDEQDKCEQEEHDRVSMEAKISMEVNHRKKTKAMVDFYSEVQDYYSEIDESDRMKRKKSRLAANSVAVAAASDGLQKMEIEKSSKRGGDGGGGSGHHRRLWVKDRSKAWWDECNSPDYPDEEFKKQFRMGRATFDMICEELNSAIAKEDTTLRTAIPVRQRVAVCLWRLATGDPLRVVSKKFGLGISTCHKLVLEVCTAIRTVLMPKHLQWPEEETLRRIKEEYESISGIPNVVGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPRGVFTDVCIGWPGSMPDDQVLEKSALFQRANGGLLKGVWIVGGSSYPLLDWVLVPYTQQHLTWTQHAFNEKIGEIQKVAKDAFARLKGRWRCLQKRTEVKLQDLPVVLGACCVLHNICELGNEEMDTELLTELQDDEMAPEIALRSVSSMKARDAIAHNLLHHGLAGTSFL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30372288 30373766 + ClCG05G018050.1 Cla05g01848 273338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01848 492 MobiDBLite consensus disorder prediction 121 141 - -
Cla05g01848 492 Pfam DDE superfamily endonuclease 281 437 IPR027806 -
Cla05g01848 492 PANTHER UNCHARACTERIZED 11 491 IPR045249 -
Cla05g01848 492 MobiDBLite consensus disorder prediction 9 28 - -
Cla05g01848 492 MobiDBLite consensus disorder prediction 120 141 - -
Cla05g01848 492 PANTHER NUCLEASE 11 491 - -
Cla05g01848 492 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01848 - - - bhj:120087340 924.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01848 Cla-Chr5:30372288 Cla09g01709 Cla-Chr9:34238121 2.65E-25 dispersed
Cla03g00184 Cla-Chr3:2063386 Cla05g01848 Cla-Chr5:30372288 1.51E-39 transposed
Cla07g00292 Cla-Chr7:3215725 Cla05g01848 Cla-Chr5:30372288 7.28E-39 transposed
Cla09g00679 Cla-Chr9:6483500 Cla05g01848 Cla-Chr5:30372288 1.01E-43 transposed
Cla11g00320 Cla-Chr11:3653511 Cla05g01848 Cla-Chr5:30372288 2.23E-22 transposed
Cla03g01480 Cla-Chr3:30302299 Cla05g01848 Cla-Chr5:30372288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g114 Blo01g01511 . . . . . . . . . Cma01g01722 . Car09g00299 . . . . . . . . . . . Cla05g01848 Cam05g1972 Cec05g1985 Cco05g2044 Clacu05g1965 Cmu05g1846 Cre05g1970 Cone4ag1676 Cone7ag1276 Cone17ag0936 Cone20ag0279 Lsi04g01411 . . . . . . . . . . . Sed13g1880 Cmo01g01791 Cmo09g00351 Cma09g00351 . Car01g01336 . . Cpe02g00274 Bhi09g03130 Tan01g4604 Cmetu07g1835 . Hepe01g1899 Mch11g0431 . . . . . . . . . . . Cme07g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001890 0 2 1 0 0 2 4 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 3 2 2 3 2 1 67