Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01850 ATGGAGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAAAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCAATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGGTAGCCGTATCAGGAGACCCCATGTTGCCATAA 1554 41.76 MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLNGTGGDYTTELIGNEAEMQMVAVSGDPMLP 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30387124 30393778 + ClCG05G018070.1 Cla05g01850 273340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01850 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cla05g01850 517 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01850 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 511 - -
Cla05g01850 517 Gene3D Transferase(Phosphotransferase) domain 1 293 412 - -
Cla05g01850 517 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Cla05g01850 517 CDD STKc_NDR_like 91 459 - -
Cla05g01850 517 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01850 517 MobiDBLite consensus disorder prediction 1 20 - -
Cla05g01850 517 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla05g01850 517 SUPERFAMILY Protein kinase-like (PK-like) 90 440 IPR011009 -
Cla05g01850 517 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 511 - -
Cla05g01850 517 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cla05g01850 517 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla05g01850 517 Gene3D Phosphorylase Kinase; domain 1 413 423 - -
Cla05g01850 517 Gene3D Phosphorylase Kinase; domain 1 91 176 - -
Cla05g01850 517 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cla05g01850 517 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01850 517 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01850 Cla-Chr5:30387124 Cla06g00671 Cla-Chr6:8500197 0 dispersed
Cla01g02478 Cla-Chr1:38435227 Cla05g01850 Cla-Chr5:30387124 0 transposed
Cla04g01254 Cla-Chr4:27676085 Cla05g01850 Cla-Chr5:30387124 2.16E-20 transposed
Cla03g01479 Cla-Chr3:30288766 Cla05g01850 Cla-Chr5:30387124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80581 PF00069 Pkinase 7.80E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01850 K08790 - csv:101212228 1028.85