Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01850 | ATGGAGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAAAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCAATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGGTAGCCGTATCAGGAGACCCCATGTTGCCATAA | 1554 | 41.76 | MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLNGTGGDYTTELIGNEAEMQMVAVSGDPMLP | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30387124 | 30393778 | + | ClCG05G018070.1 | Cla05g01850 | 273340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01850 | 517 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672|GO:0006468 | |
Cla05g01850 | 517 | ProSiteProfiles | Protein kinase domain profile. | 93 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 13 | 511 | - | - | |
Cla05g01850 | 517 | Gene3D | Transferase(Phosphotransferase) domain 1 | 293 | 412 | - | - | |
Cla05g01850 | 517 | Gene3D | Transferase(Phosphotransferase) domain 1 | 177 | 243 | - | - | |
Cla05g01850 | 517 | CDD | STKc_NDR_like | 91 | 459 | - | - | |
Cla05g01850 | 517 | SMART | serkin_6 | 93 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cla05g01850 | 517 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 395 | 468 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | SUPERFAMILY | Protein kinase-like (PK-like) | 90 | 440 | IPR011009 | - | |
Cla05g01850 | 517 | PANTHER | AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN | 13 | 511 | - | - | |
Cla05g01850 | 517 | Pfam | Protein kinase C terminal domain | 413 | 458 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | SMART | pkinase_C_6 | 395 | 460 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | Gene3D | Phosphorylase Kinase; domain 1 | 413 | 423 | - | - | |
Cla05g01850 | 517 | Gene3D | Phosphorylase Kinase; domain 1 | 91 | 176 | - | - | |
Cla05g01850 | 517 | ProSitePatterns | Protein kinases ATP-binding region signature. | 99 | 122 | IPR017441 | GO:0005524 | |
Cla05g01850 | 517 | Pfam | Protein kinase domain | 94 | 243 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g01850 | 517 | Pfam | Protein kinase domain | 285 | 394 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01850 | Cla-Chr5:30387124 | Cla06g00671 | Cla-Chr6:8500197 | 0 | dispersed | |
Cla01g02478 | Cla-Chr1:38435227 | Cla05g01850 | Cla-Chr5:30387124 | 0 | transposed | |
Cla04g01254 | Cla-Chr4:27676085 | Cla05g01850 | Cla-Chr5:30387124 | 2.16E-20 | transposed | |
Cla03g01479 | Cla-Chr3:30288766 | Cla05g01850 | Cla-Chr5:30387124 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80581 | PF00069 | Pkinase | 7.80E-43 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01850 | K08790 | - | csv:101212228 | 1028.85 |