Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01856 ATGGAGGTAGCCAAAATGGGATTGGACCCAATATTCCTGAACGCCCTCCACGACCTTCTGGACTTCACGGACGAGCCAGGACAGAGCAGTCACCACGCGCCGTCACGCGCCTACGTGAGGGACGCAAAAGCGATGGCGGCAACTCCGGCGGACGTGGTGGAATATCCAAACTCGTACCAATTCACCATCGACATGCCTGGCCTTAAACCAGACCAAATCAAGGTGAAAATAGAGGACAACCAGTTGGTTGTGAGCGGCGAGAGGAAGAGGGAAAGTGAAAAAGTAAAGGAAGGCAAATTTGTGAGAATGGAGAGGAGGCTAGGAAAGTACTTGAAGAAATTTGACCTGCCGGAAACCGCCGATGCCGACAAGGTGTCCGCGGCGTACGAGAACGGAGTGCTGTCGGTAACAGTGGAGAAGAAGCCGCCGCCGGAGCCCAAAATGGCCAAGAGTATTGAGTGTTCTTTCGCTTTACTCTCAAGGATTTCTCCAACTAACAAGAGGAAAATGGATCTCAGAATCATGGGCCTAGACTCCCCAATCTTCTCCACTCTCCAGCACGTGATGGACCTCGCCGACGAGGCCGACAAGTCGTTCAGCGCCCCGACCCGGACATACGTTCGGGATGCCAAGGCCATGGCAGCCACTCCGGCCGACGTCAAGGAGTATCCGAATTCCTACGTTTTCGTCGTCGACATGCCAGGGCTGAAGGTGGGGGACATCAAGGTTCAGGTCGAGGATGACAATGTGCTACTGATAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAGGGAGCTAAGTATGTGAGGATGGAGAGAAGAGTCGGCAAGTTAATGAGGAAATTCGTGTTGCCGGAAAATGCTAACACTGATGCCATATCAGCGGTTTGTCAGGATGGGGTGCTGACTGTGACTGTCCAAAAGTTGCCGCCACCTGAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 978 53.27 MEVAKMGLDPIFLNALHDLLDFTDEPGQSSHHAPSRAYVRDAKAMAATPADVVEYPNSYQFTIDMPGLKPDQIKVKIEDNQLVVSGERKRESEKVKEGKFVRMERRLGKYLKKFDLPETADADKVSAAYENGVLSVTVEKKPPPEPKMAKSIECSFALLSRISPTNKRKMDLRIMGLDSPIFSTLQHVMDLADEADKSFSAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKLMRKFVLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKIVEVKVN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30437304 30441449 - ClCG05G018130.2 Cla05g01856 273346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01856 325 Gene3D - 12 154 IPR008978 -
Cla05g01856 325 Gene3D - 177 322 IPR008978 -
Cla05g01856 325 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 178 324 - -
Cla05g01856 325 CDD ACD_sHsps-like 51 140 - -
Cla05g01856 325 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 154 - -
Cla05g01856 325 PANTHER 18.8 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 9 154 - -
Cla05g01856 325 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Cla05g01856 325 PANTHER 18.8 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 178 324 - -
Cla05g01856 325 SUPERFAMILY HSP20-like chaperones 184 319 IPR008978 -
Cla05g01856 325 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 209 325 IPR002068 -
Cla05g01856 325 SUPERFAMILY HSP20-like chaperones 32 148 IPR008978 -
Cla05g01856 325 Pfam Hsp20/alpha crystallin family 219 323 IPR002068 -
Cla05g01856 325 Pfam Hsp20/alpha crystallin family 52 153 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01856 K13993 HSP20; HSP20 family protein - csv:101213192 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01384 Cla-Chr3:29297518 Cla05g01856 Cla-Chr5:30437304 5.92E-09 dispersed
Cla05g01856 Cla-Chr5:30437304 Cla07g01367 Cla-Chr7:30796887 1.56E-19 dispersed
Cla05g01856 Cla-Chr5:30437304 Cla07g00347 Cla-Chr7:4222801 1.70E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74