Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01857 | ATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA | 1053 | 42.83 | MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30443758 | 30444810 | + | ClCG05G018150.1 | Cla05g01857 | 273347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01857 | 350 | SUPERFAMILY | Mitochondrial carrier | 23 | 337 | IPR023395 | - | |
| Cla05g01857 | 350 | Pfam | Mitochondrial carrier protein | 126 | 222 | IPR018108 | - | |
| Cla05g01857 | 350 | Pfam | Mitochondrial carrier protein | 251 | 344 | IPR018108 | - | |
| Cla05g01857 | 350 | Pfam | Mitochondrial carrier protein | 36 | 107 | IPR018108 | - | |
| Cla05g01857 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 108 | IPR018108 | - | |
| Cla05g01857 | 350 | Gene3D | Mitochondrial carrier domain | 29 | 348 | IPR023395 | - | |
| Cla05g01857 | 350 | PRINTS | Mitochondrial carrier protein signature | 40 | 58 | IPR002067 | GO:0055085 | |
| Cla05g01857 | 350 | PRINTS | Mitochondrial carrier protein signature | 81 | 99 | IPR002067 | GO:0055085 | |
| Cla05g01857 | 350 | PRINTS | Mitochondrial carrier protein signature | 132 | 154 | IPR002067 | GO:0055085 | |
| Cla05g01857 | 350 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN | 1 | 347 | - | - | |
| Cla05g01857 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 123 | 221 | IPR018108 | - | |
| Cla05g01857 | 350 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 1 | 347 | - | - | |
| Cla05g01857 | 350 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 250 | 340 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g01857 | Cla-Chr5:30443758 | Cla01g00261 | Cla-Chr1:2662225 | 5.21E-12 | dispersed | |
| Cla05g00729 | Cla-Chr5:6913770 | Cla05g01857 | Cla-Chr5:30443758 | 6.78E-66 | transposed | |
| Cla11g00459 | Cla-Chr11:5202512 | Cla05g01857 | Cla-Chr5:30443758 | 3.31E-77 | transposed | |
| Cla05g01857 | Cla-Chr5:30443758 | Cla08g01677 | Cla-Chr8:29393289 | 1.96E-15 | wgd | |
| Cla05g01857 | Cla-Chr5:30443758 | Cla09g00079 | Cla-Chr9:769376 | 4.07E-167 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01857 | K15121 | - | csv:101213436 | 644.81 |