Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01860 ATGAGGAAAAAGTCCCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTTCTATGCCAGTTTCTGCTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGTGATAGTAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTCGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTACCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTCAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATACCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCATGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAGTTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTGGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTACTAATTACTTTTCCGGCGCCCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGCTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAGAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGGTCTGCCCCTACTCTCATCAACCTCTAA 2913 47.51 MRKKSLDSVVCHLSFFFILLFYASFCFANRDMEALLKMKSALIGPGRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMFEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGQIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISTNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30478596 30483733 + ClCG05G018180.1 Cla05g01860 273350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01860 970 Pfam Protein kinase domain 686 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01860 970 Gene3D Ribonuclease Inhibitor 230 334 IPR032675 -
Cla05g01860 970 Gene3D Ribonuclease Inhibitor 145 229 IPR032675 -
Cla05g01860 970 SMART serkin_6 684 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01860 970 SUPERFAMILY L domain-like 380 623 - -
Cla05g01860 970 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Cla05g01860 970 ProSiteProfiles Protein kinase domain profile. 684 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01860 970 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515
Cla05g01860 970 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Cla05g01860 970 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515
Cla05g01860 970 Pfam Leucine Rich repeat 293 307 IPR001611 GO:0005515
Cla05g01860 970 Gene3D Transferase(Phosphotransferase) domain 1 759 964 - -
Cla05g01860 970 SMART LRR_typ_2 553 577 IPR003591 -
Cla05g01860 970 SMART LRR_typ_2 243 267 IPR003591 -
Cla05g01860 970 SMART LRR_typ_2 121 145 IPR003591 -
Cla05g01860 970 SMART LRR_typ_2 291 315 IPR003591 -
Cla05g01860 970 SMART LRR_typ_2 339 363 IPR003591 -
Cla05g01860 970 SMART LRR_typ_2 481 505 IPR003591 -
Cla05g01860 970 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Cla05g01860 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Cla05g01860 970 SUPERFAMILY L domain-like 70 399 - -
Cla05g01860 970 PANTHER UNNAMED PRODUCT 10 964 - -
Cla05g01860 970 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 10 964 - -
Cla05g01860 970 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
Cla05g01860 970 Gene3D Ribonuclease Inhibitor 335 627 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01860 Cla-Chr5:30478596 Cla10g00776 Cla-Chr10:14753611 0 dispersed
Cla05g01860 Cla-Chr5:30478596 Cla01g01761 Cla-Chr1:32517304 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80582 PF00069 Pkinase 1.70E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01860 K00924 - csv:101221360 1734.54