Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01863 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.88 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30508879 30510924 - ClCG05G018210.1 Cla05g01863 273353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01863 310 SMART tha2 27 247 IPR001938 -
Cla05g01863 310 CDD TLP-PA 26 246 - -
Cla05g01863 310 PIRSF PR5 1 278 IPR001938 -
Cla05g01863 310 Pfam Thaumatin family 31 247 IPR001938 -
Cla05g01863 310 PANTHER BNAA02G17480D PROTEIN 10 271 - -
Cla05g01863 310 PANTHER OS03G0233200 PROTEIN 10 271 IPR001938 -
Cla05g01863 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cla05g01863 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cla05g01863 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cla05g01863 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cla05g01863 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cla05g01863 310 Gene3D Thaumatin 25 247 IPR037176 -
Cla05g01863 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01863 Cla08g01416 CCT
Cla05g01863 Cla08g01416 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01152 Cla-Chr2:24860173 Cla05g01863 Cla-Chr5:30508879 3.92E-122 dispersed
Cla05g01863 Cla-Chr5:30508879 Cla08g01417 Cla-Chr8:27043614 2.06E-154 dispersed
Cla05g02479 Cla-Chr5:36192400 Cla05g01863 Cla-Chr5:30508879 1.18E-90 transposed
Cla01g01986 Cla-Chr1:34501575 Cla05g01863 Cla-Chr5:30508879 9.06E-93 wgd
Cla05g01863 Cla-Chr5:30508879 Cla08g01416 Cla-Chr8:27028798 8.97E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01863 - - csv:101214136 561.992