Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01871 ATGTCGGTCGCCGTCCTTGGATCTTTCTCTCCACTAAGATCTCCGACGTGGAGGGACCGCCCTCGTTTCACCATGGCCGTCCGATCCAAACCGGTCTCTATTTCCCCAATTTTGACTAAGTTTCAGAAAGATTGCGACACCCCTTTGCCGGTATTGCGCCACGTGGCCGATTCAATGGCCAATGATATGCGAGCTGGGCTTGCCGTCGACGGCGGCAGCGATCTCAAAATGATTCTTAGCTATGTCGACACTCTCCCTAGTGGGAATGAGAAAGGGTTATTTTATGCATTGGATCTCGGTGGCACTAATTTCCGAGTGCTTAGAGTTCAATTGGGTGGGAAAGAAGAACGTGTTATTTCCACTGAATTTGAACAAGTTTCAATCCCTCAACACCTAATGTTTGCCACATCCCAGGAGCTCTTTGATTTTATTGCTTCTGGTCTGGAAAAATTTTTAGAAAGTGAAGGTGACAAATTCCACCTTTGTCCTGGAAGAAAGAGAGAGATTGGATTCACATTCTCATTCCCTGTGAAACAAACTTCCATTGATTCTGGCATATTAATCAAGTGGACTAAAGGTTTTGCTGTTTCTGGAATGGATGGGAAAGATGTTGTTGATTGTCTAAATGAAGCCATGGAAAGGCGAGGACTAGATATTCGTGTTTCGGCCCTTGTTAACGATGCGGTTGGAACCTTGGCTGGAGCAAGATACTACGACGACGATGTCGTGGCTGCTGTGATTTTAGGTACAGGAACCAATGCCTGTTATATAGAACAAAAGAATGCTATTCCTAAGTTGCAAGGCCCGGCATCTTCTTCAGGGAAAACAATTATCAGCACAGAGTGGGGAGCATATTCAAATGGTCTTCCTCTTAGTGTTTTTGATAGAGAGATGGATGCTGCCAGTATCAATCCAGGGGAGCAGATCTTTGAGAAGACAATAGCTGGAATGTACCTTGGTGAAATTGCTCGTAGAGTGCTTTTGGCAATGGCTGAATTCTCCCCTCTTTTTGGCAAATCCATTCCCGAAAAGTTGTTGAAGCATTTCACCCTCAGGTATCGTTTCAAGCTGATCCTTCCTTCATTCATATGTCCTCGTGACGATATCATTTTAACAGAACATGTTGAATGTGTATGTATGTATCAAGATGACTCCAACGACCTCCAAGCTGTCGGATCAATCTTGTACAACGTTTTCGGGGTCGAATCGGATTTAAGTGCGAGAAAAATGGTCGTAGAGGTGTGTGACACGCTTTCCAAGCGAGGAGGGCGATTGGCAGGGGCGGGAATTGTAGGAGTTCTACACAAGATTGAAGATTTTGAAGATGTAAAGTTTGGAAAGAGGAGAGTTGTGGCCATGGATGGAGGATTGTATGAGAATTATCCACAATACAGAAGGTACCTTGAAGAAGGAATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTTGAATACGAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTTGTTGAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTATTTTTCTCTCTTTGTGTGGACATAACAGACAATGAGTTGGCCTACCTCGAGTGCATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTTGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGCGACCACAACAGGTTCCACATGCCCTCTTGCAGACCTTCGGCCTCGACGATAATCGGCACCTCGCATCACAAGCCTCCCCACAATCTGCAAGAGGCTCAGATTTTAGTCATGAAGCAAAAAGCATTAACACAACAATGTGGGTGCAGGTGCTCAAATCTCATCGTTACCTATCTCGCGAGGAAGAGGGTTATCCACCTGAGTTGTGA 2004 44.46 MSVAVLGSFSPLRSPTWRDRPRFTMAVRSKPVSISPILTKFQKDCDTPLPVLRHVADSMANDMRAGLAVDGGSDLKMILSYVDTLPSGNEKGLFYALDLGGTNFRVLRVQLGGKEERVISTEFEQVSIPQHLMFATSQELFDFIASGLEKFLESEGDKFHLCPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGMDGKDVVDCLNEAMERRGLDIRVSALVNDAVGTLAGARYYDDDVVAAVILGTGTNACYIEQKNAIPKLQGPASSSGKTIISTEWGAYSNGLPLSVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLLAMAEFSPLFGKSIPEKLLKHFTLRYRFKLILPSFICPRDDIILTEHVECVCMYQDDSNDLQAVGSILYNVFGVESDLSARKMVVEVCDTLSKRGGRLAGAGIVGVLHKIEDFEDVKFGKRRVVAMDGGLYENYPQYRRYLEEGIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKRPQQVPHALLQTFGLDDNRHLASQASPQSARGSDFSHEAKSINTTMWVQVLKSHRYLSREEEGYPPEL 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30563073 30569644 - ClCG05G018290.2 Cla05g01871 273361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01871 667 PANTHER HEXOKINASE 22 473 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cla05g01871 667 SUPERFAMILY SNARE-like 472 599 IPR011012 -
Cla05g01871 667 CDD AP2_sigma 472 599 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Cla05g01871 667 PRINTS Hexokinase family signature 308 330 - -
Cla05g01871 667 PRINTS Hexokinase family signature 169 194 - -
Cla05g01871 667 PRINTS Hexokinase family signature 221 237 - -
Cla05g01871 667 PRINTS Hexokinase family signature 95 111 - -
Cla05g01871 667 PRINTS Hexokinase family signature 244 258 - -
Cla05g01871 667 SUPERFAMILY Actin-like ATPase domain 26 239 IPR043129 -
Cla05g01871 667 Gene3D - 80 237 - -
Cla05g01871 667 ProSiteProfiles Hexokinase domain profile. 32 506 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cla05g01871 667 SUPERFAMILY Actin-like ATPase domain 241 495 IPR043129 -
Cla05g01871 667 CDD NBD_sugar-kinase_HSP70_actin 96 258 - -
Cla05g01871 667 ProSitePatterns Hexokinase domain signature. 169 194 IPR019807 GO:0004396|GO:0005524|GO:0006096
Cla05g01871 667 Pfam Hexokinase 38 237 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cla05g01871 667 Pfam Hexokinase 244 482 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cla05g01871 667 Gene3D - 58 486 - -
Cla05g01871 667 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 22 473 - -
Cla05g01871 667 Pfam Clathrin adaptor complex small chain 472 600 IPR022775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01871 K00844 HK; hexokinase [EC:2.7.1.1] - csv:101216058 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00318 Cla-Chr2:3091818 Cla05g01871 Cla-Chr5:30563073 1.48E-46 dispersed
Cla03g01534 Cla-Chr3:30962378 Cla05g01871 Cla-Chr5:30563073 3.68E-21 dispersed
Cla03g01547 Cla-Chr3:31128998 Cla05g01871 Cla-Chr5:30563073 2.80E-126 dispersed
Cla05g01871 Cla-Chr5:30563073 Cla07g00569 Cla-Chr7:9672496 2.22E-14 dispersed
Cla05g01871 Cla-Chr5:30563073 Cla11g00187 Cla-Chr11:2226510 1.74E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29