Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01872 ATGGAAAATGGAAGTGTGAGATTTAAAAGAGCAGAGATTGATACGAGAAAGCCATTTGGTTCAGTGAAGGAAGCAGTTACGTTGTTTGGTGACAAAGTTTTGGCTGGAGAACTTTATAGCAACAGGCTCAAACAGATGCATGGGGGAGATCATCATGAACTGCGTAAAGAGAGAAATGGGGAAAGCCAATTGAAGTTGGGAAACGTTGCAGCTGAATTAGAAGAAACAAAGCAAAGCCTTTCAAAAGCCAAAGAAGAAAGCATGGTAATGGCTCATTGCCTTTCATCTCTTCAAGAAGAGCTGGAGAAGACCAAAAAAGAGCTTCAACTCTTAAAGGAACGAGAATTATCTTCATTATCCCAAGATGTAAAACATGTAGAGACTGATTCAATGGAATTCCAAAAGAAACGTTATGTCACTTTTGCAAACCCTCCTGCCGCCGTAGCTCACCTCGCCATTCCCCCGCCTGCCGCCGTCGAAAAATTGGACAGGCTCTCCTCTCTTAGAAGGGAAAAGAATAAGATCAAGAAGACATTAATCCCTCTCATTTCCGGCATATTTTCCAAGAAAAAAGGAAATTAG 582 41.58 MENGSVRFKRAEIDTRKPFGSVKEAVTLFGDKVLAGELYSNRLKQMHGGDHHELRKERNGESQLKLGNVAAELEETKQSLSKAKEESMVMAHCLSSLQEELEKTKKELQLLKERELSSLSQDVKHVETDSMEFQKKRYVTFANPPAAVAHLAIPPPAAVEKLDRLSSLRREKNKIKKTLIPLISGIFSKKKGN 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30577848 30580377 + ClCG05G018310.1 Cla05g01872 273362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01872 193 Coils Coil 66 86 - -
Cla05g01872 193 Coils Coil 94 114 - -
Cla05g01872 193 PANTHER OSJNBB0050O03.3 PROTEIN 3 191 - -
Cla05g01872 193 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 3 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01872 - - - csv:101222301 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01306 Cla-Chr11:26581528 Cla05g01872 Cla-Chr5:30577848 4.47E-10 transposed
Cla01g01977 Cla-Chr1:34388885 Cla05g01872 Cla-Chr5:30577848 1.42E-36 wgd
Cla05g01872 Cla-Chr5:30577848 Cla08g01428 Cla-Chr8:27132229 7.80E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1104 . . . . . . . . . . Cma01g01970 Cma09g00106 Car01g01541 . . Cpe06g00070 . . . . . . . . . . . . . . . . Cone7ag1883 Cone17ag1402 Cone20ag0081 Lsi04g01741 Csa03g04275 Chy04g00421 . Blo17g00746 . Bda08g01220 . . Bpe05g00139 . Bma05g00164 Sed01g2490 Cmo01g02028 Cmo09g00102 . . . Car09g00096 . Cpe02g00072 Bhi09g02093 Tan01g5012 Cmetu10g1833 . Hepe01g1618 Mch11g0121 . Cla05g01872 Cam05g2003 Cec05g2015 Cco05g2074 Clacu05g1996 Cmu05g1877 Cre05g2000 . . . Cme04g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007936 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 36