Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01874 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACTCCGCCACCCTCCTCCGCCCAATCCTCATGGGATCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCACCACCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGCTGGGTTTCTGTGGAATGACGTGTCATTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTCGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGCGACGGAAGGAGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGCGACGGCGACAGCGACGGAGGAGGAGAATCTGTCGATGGCGGCAGCCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1296 52.47 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAAGFLWNDVSFSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALSCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATATATATEEENLSMAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30593687 30596579 - ClCG05G018330.2 Cla05g01874 273364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01874 431 MobiDBLite consensus disorder prediction 92 120 - -
Cla05g01874 431 Gene3D - 207 429 - -
Cla05g01874 431 MobiDBLite consensus disorder prediction 89 144 - -
Cla05g01874 431 MobiDBLite consensus disorder prediction 51 71 - -
Cla05g01874 431 ProSitePatterns Zinc finger C2H2 type domain signature. 178 201 IPR013087 -
Cla05g01874 431 SUPERFAMILY ADP-ribosylation 213 427 - -
Cla05g01874 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 430 - -
Cla05g01874 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 202 IPR013087 -
Cla05g01874 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 430 - -
Cla05g01874 431 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00889 Cla-Chr3:12495477 Cla05g01874 Cla-Chr5:30593687 1.56E-106 dispersed
Cla03g00895 Cla-Chr3:12603597 Cla05g01874 Cla-Chr5:30593687 4.88E-17 dispersed
Cla05g01547 Cla-Chr5:25896322 Cla05g01874 Cla-Chr5:30593687 1.12E-52 dispersed
Cla05g01874 Cla-Chr5:30593687 Cla10g00594 Cla-Chr10:8771237 1.45E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61123 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01874 - - csv:101222539 691.804