Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01887 ATGTTACTGCAATTTATGCAGCCTGAAATGGACCGACGAGGTTGGCCCTGGAAGAAGAAATCATCTGAGAAGACAGCAGAGAAGGCCAATGCATCGGAGTTGGCTGGAAGTCAGGGTGATCAGGTAATTAGTAAAACTAATTCCCCCCTTCCTATAAATCCTTACTATTCACTCGGGTTGTTCAGTAGTACTGTTCTTACAATAATTCTCTTCCCCACAGTAATTTTAGGTAATGGTGGCGGGATTTGGGATGGATATAAAAAACCAAGTTATGTACAAATCTCTGTTGAGTCCTATTCACATCTTACGGGTTTGGAGGATCAAGTAAAAATGCGCGACGAACAAATCCAGACACTGGAGGGTGAGATTAAAGAGCTCAATGAGAAACTATCAGCTGCACACTCAGAGATGACTACCAAGGACAACCTAGTGAAACAGCATGCTAAAGTTGCTGAAGAAGCTGTCTCAGGTTGGGAGAAAGCTGAAGCAGAAGCTCTGGCATTAAAAAATCATTTAGAGACTGTGACACTGTCCAAACTCACTGCTGAAGATCGGGCATCACATTTGGATGGTGCTCTGAAGGAATGCATGAGACAGATAAGAAATCTGAAAGAAGAACATGAACATAAATTGCAAGAAGTTATCTTCACCAAGACTAAGCAGTGGGACAAAGTTAAACTTGAGTTAGAATCAAAAATGGCAAACTTGGACCAAGAACTTCTTAGGTCTGCTGCTGAAAATGCTGCACTTTCAAGGTCATTACAAGAACGTTCCAACATGCTGATTAAAATAAGTGAAGAAAAGTCACAAGCTGAGGCTGAGATTGAGATGCTGAAGGGTAACATTGAATCATGTGAAAGAGAAATAAATTCACTTAAATACGAATTACATATAGTTTCCAAGGAGCTAGAGATCCGTAATGAAGAAAAGAATATGAGTATGAGATCTGCTGAAGCAGCCAACAAGCAGCACATGGAAGGTGTTAAGAAAATAACAAAACTGGAAGCAGAATGTCAAAGGTTACGTGGTCTTGTGCGGAAGAAATTGCCTGGTCCTGCTGCACTTGCACAAATGAAGCTAGAGGTTGAAAGTTTAGGCAGGGAATATGGCGACACTCGTGTAAGGAAATCACCTAGTAGGCCTCCATCTCCACATATGTTATCTGTTCCTGACTTTTCCCTTGATAATGCATTGAAATTCCAAAAGGAGAATGAGTTCCTCACAGAACGAATGTTAGCGATGGAGGAGGAAACAAAGATGCTCAAAGAGGCTTTGGCAAAGCGTAATAGTGAGTTGCAGACTTCCAGGAGTATGTGTGCCAAGACAGCTAGTAAACTTCAAAATTTAGAGGCACAACTCCAAAATGGCAATCACCAAAGAAACTCCCCGAAGTCTGTTGTTCAGTACACTGCCGATGGCTTTTCATGCCAAAACACAAGCCATCCTCCCAGCTTGACCTCTATGTCTGAAGATGGAAATGAGGATGGCCAGAGCTGTGCAGATTCTCTATCCATAGCGGCAACCTCTGACATTTCTCAATTTAGGGAGAAGAAGAATGAGAAATTAAGTAAAACTGAAAGTGGAAGTCACTTGGGGCTCATGGATGACTTTCTGGAAATGGAAAAATTGGCATGCCAATCAGATGAGTCAAATGAAGCCATCCTTGCTTCAGATAGTTCAAACAATAAGGCCTCTGAAGTTGTACACCAGGAGTCCAATGGTATCCAGTCCGAACAGCATCTGGATTCAAGTCCATCTACAGATGTTGTATCTTCTACTCATGATCTGTCAACAGAGGGCAGTGATTCTGAAGGATTGCCTTTAATGAAACTCCGATCAAGAATATCTATGATTTTTGAGTCTATTTCAAAGGATGCGGATACTGGAAAAATTTTGGAGGATATTAAATGCATTGTTCAAGATGCTCATGATGCACTTCAGCAACCTACTGTCAGTTGTTTGAGCTATGTTTCTGAAGTGCAATGTCCTGATACGACATGTGATAGGCAAGCCAATCCGGATGATGCTGGTTTAGGAGTAGAAAGAGAAATTTCTTTATCCCAGCCTGATACACACAATCAGCCTATGAGCCAAGAGCTGGAAGCTGCCATCTCTCAAATTCATGAATTTGTGCTGTTCCTTGGGAAAGAAGCCTCCAGAGTTCATGATACAGTATCTCCAGATGGGCATGGACTGGGTCAAAAAGTTGAGGAATTCTCAGCCACCTTTAGTAAAATTGTGCATGCGAACACAAGTTTGGTGGACTTTGTTATTATTCTATCTCATGTTTTATCTGAAGCCAGTGAGCTCAGATTTAGTTTCATTGGATGCAAGGATACCGATGGAGATACTAATAGTCCCGATTGCATAGACAAGGTAGCTTTACCAGAGCACAAGGTTGTCCAAAATGACTCACTGGACGAAAGATATACCAACGGTTGTTCCCATATTTCTAGTCCAACTTCTGATATTGAAGTTCCTTACGATGGAAATCTAGTCTCCAGCTATGAATCAAATTCCATATTACCCAAACTCTCATCAGAGGACATTGAAGAGCTAAAATTAGCCAAGGAGAACCTGTCAAAGGACTTGGCAAGATCTACAGAGGACCTTGAGGCAACCAAACGTAAACTGCAGGAAACAGAGCAGCTGCTAGCAGAATCTAGATCACAGTTGGCTTTTGCTCAAAAGTCAAACAGCTTATCAGAAACACAGCTGAAATGTATGGCAGAGTCATACAGGTCACTTGAAGCACGTGCAGAGGATTTGGAAACCGAAATAAATCTTTTGCAAGCTAAATCTGAAGCTTTGGACAATGATCTTCAAGATGAGAAGAGGAATCATCACGAAGCTTTGTCCAAGTGCCAGGAACTTCAAGAGCAACTACAGAGGAATGAGGTTTGCTGCGCTATTTGTTCTTCAGCTATTGGTGGTGATCCCCAGAAGAGCCAGGAGATAGAGTTGACTGCTGCTGCAGAGAAGTTGGCAGAATGTCAAGAAACAATTTTTCTTCTCAGCAAGCAGTTGAAATCTCTTCGACCACAACCAGATTTCAGTGGATCTCCATTCAGCGAGAGAAGCCAAAGAGTTGAAGAGTTTACCGAGGACGAACTACCATCTAAAAGTGGCACCAATCTTCTGGACCTTGATCGGTCCGAAATGGATACTGCCACTTCTGTGATGACGCCGGTAGTCGGTGCAGAATCCCCTTGTAGTGCTTCCGACGGTGAAGGCGGAAGCTTCTTAAGATCACCTATCAATTCAAAACATCCAAAACACAGGCCAACCAAATCAAGCTCCTCCTCTTCCTCCTCCGCTCCAACTCCAGAGAAACAGACTCGAGGATTTAGTAGATTCTTCTCCTCGAAAGGAAAGAACAACAGTCATTAG 3390 42.42 MLLQFMQPEMDRRGWPWKKKSSEKTAEKANASELAGSQGDQVISKTNSPLPINPYYSLGLFSSTVLTIILFPTVILGNGGGIWDGYKKPSYVQISVESYSHLTGLEDQVKMRDEQIQTLEGEIKELNEKLSAAHSEMTTKDNLVKQHAKVAEEAVSGWEKAEAEALALKNHLETVTLSKLTAEDRASHLDGALKECMRQIRNLKEEHEHKLQEVIFTKTKQWDKVKLELESKMANLDQELLRSAAENAALSRSLQERSNMLIKISEEKSQAEAEIEMLKGNIESCEREINSLKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKITKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGREYGDTRVRKSPSRPPSPHMLSVPDFSLDNALKFQKENEFLTERMLAMEEETKMLKEALAKRNSELQTSRSMCAKTASKLQNLEAQLQNGNHQRNSPKSVVQYTADGFSCQNTSHPPSLTSMSEDGNEDGQSCADSLSIAATSDISQFREKKNEKLSKTESGSHLGLMDDFLEMEKLACQSDESNEAILASDSSNNKASEVVHQESNGIQSEQHLDSSPSTDVVSSTHDLSTEGSDSEGLPLMKLRSRISMIFESISKDADTGKILEDIKCIVQDAHDALQQPTVSCLSYVSEVQCPDTTCDRQANPDDAGLGVEREISLSQPDTHNQPMSQELEAAISQIHEFVLFLGKEASRVHDTVSPDGHGLGQKVEEFSATFSKIVHANTSLVDFVIILSHVLSEASELRFSFIGCKDTDGDTNSPDCIDKVALPEHKVVQNDSLDERYTNGCSHISSPTSDIEVPYDGNLVSSYESNSILPKLSSEDIEELKLAKENLSKDLARSTEDLEATKRKLQETEQLLAESRSQLAFAQKSNSLSETQLKCMAESYRSLEARAEDLETEINLLQAKSEALDNDLQDEKRNHHEALSKCQELQEQLQRNEVCCAICSSAIGGDPQKSQEIELTAAAEKLAECQETIFLLSKQLKSLRPQPDFSGSPFSERSQRVEEFTEDELPSKSGTNLLDLDRSEMDTATSVMTPVVGAESPCSASDGEGGSFLRSPINSKHPKHRPTKSSSSSSSSAPTPEKQTRGFSRFFSSKGKNNSH 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30704884 30709251 - ClCG05G018460.2 Cla05g01887 273377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01887 1129 Coils Coil 439 459 - -
Cla05g01887 1129 SUPERFAMILY Tropomyosin 851 1013 - -
Cla05g01887 1129 Coils Coil 226 246 - -
Cla05g01887 1129 Coils Coil 261 320 - -
Cla05g01887 1129 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 10 1127 - -
Cla05g01887 1129 Coils Coil 186 213 - -
Cla05g01887 1129 PANTHER FILAMENT-PLANT-LIKE PROTEIN 10 1127 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 1012 1027 - -
Cla05g01887 1129 Coils Coil 397 424 - -
Cla05g01887 1129 Coils Coil 102 136 - -
Cla05g01887 1129 Pfam Filament-like plant protein, long coiled-coil 140 1016 IPR008587 -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 557 605 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 1039 1065 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 1097 1129 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 557 600 - -
Cla05g01887 1129 Coils Coil 850 898 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 14 43 - -
Cla05g01887 1129 Coils Coil 906 961 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 475 501 - -
Cla05g01887 1129 MobiDBLite consensus disorder prediction 1012 1129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01887 - - - csv:101217886 1932.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g01887 Cla08g00588 CCT
Cla05g01887 Cla08g00588 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01203 Cla-Chr2:25614857 Cla05g01887 Cla-Chr5:30704884 1.16E-86 dispersed
Cla05g01887 Cla-Chr5:30704884 Cla08g00588 Cla-Chr8:17728886 7.36E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1082 Blo01g01590 Blo12g00890 Bda01g00496 Bda03g00283 Bpe02g00358 Bpe04g00239 Bma04g00240 Bma01g02360 . Cmo15g00692 Cma01g01963 Cma09g00113 Car01g01534 . . Cpe06g00076 Cpe13g00617 . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 Cone4ag1962 Cone7ag1876 . . Lsi04g01729 Csa03g04266 Chy04g00430 . . . . . . . . . Sed01g2501 Cmo01g02021 Cmo09g00111 . . . Car09g00102 . Cpe02g00080 Bhi09g02102 Tan01g5000 . . Hepe01g1627 Mch11g0131 . Cla05g01887 Cam05g2020 Cec05g2031 Cco05g2087 Clacu05g2011 Cmu05g1892 Cre05g2017 Lsi08g00434 . . Cme04g00482
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003482 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 48