Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01890 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGGTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGTTATGGCACGCTTGTGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCGCAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTACGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCTTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTTTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCAGTTCTATCTGCCGATAGTATGCATATTGGGGTTCTTGCAGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGAGAAATCTTCAGGTTGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTCAGGGAACCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGCCAGTGACCAAAATGCAGCAGCTTATACCATCAGAAACTGCATCTCCCGGGAATCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGTCATAAACCCAAATTCATCACCAAAAGAAAATCTACCCGGAAAAGTACACACTTCGGCGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGTAGACAAGGCGAAATATGAACGTGATCTTTCAACCAATCAGTCCAATCCATTGCCCTCAGTTGGAGATTGTGGGGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCGCAGCTTGAGTCACTAATCCAACACCCACAACCAACTGACATGTCTCAGCCTGAATTTACGAATTCAAATGGTTTGATTTCATCCTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTAGGACTGCAAGACTCTTCAACAGTCTTTCCTGAGGCTCTTAATTTTCCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAACAATATAAGGTTCTCATCCCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGTATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTTTGGTTGATCATGCCGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTCACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTATGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAGGGGTTGCTTAATGATCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAATGATGTCCTGCTTATTGGTGATGATCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTCCTATGATGCAAGATCCTGGCCTCAAATTTATCTGGGTATGCGAGGTTCACGATGGAGCCATATCTTTGTTGCCTGTCTTTCATTTGCATATTTCCGTTCTCTAG 2901 44.71 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLQGTTLQQDSVNNLVKIQDMKDMQPVTKMQQLIPSETASPGNQNHHHHPAPTQSDVINPNSSPKENLPGKVHTSAAIESEAPTAADVDKAKYERDLSTNQSNPLPSVGDCGEEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPTDMSQPEFTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDVSNLNCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDAHFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSPMMQDPGLKFIWVCEVHDGAISLLPVFHLHISVL 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30764085 30769648 + ClCG05G018490.1 Cla05g01890 273380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01890 966 MobiDBLite consensus disorder prediction 484 538 - -
Cla05g01890 966 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cla05g01890 966 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cla05g01890 966 Gene3D - 831 923 - -
Cla05g01890 966 Gene3D - 147 250 IPR015300 -
Cla05g01890 966 Gene3D - 313 385 - -
Cla05g01890 966 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla05g01890 966 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cla05g01890 966 Pfam AUX/IAA family 835 921 IPR033389 -
Cla05g01890 966 ProSiteProfiles PB1 domain profile. 834 918 IPR000270 GO:0005515
Cla05g01890 966 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 937 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla05g01890 966 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cla05g01890 966 MobiDBLite consensus disorder prediction 484 517 - -
Cla05g01890 966 PANTHER AUXIN RESPONSE FACTOR 5 30 937 - -
Cla05g01890 966 SUPERFAMILY CAD & PB1 domains 836 913 - -
Cla05g01890 966 SMART B3_2 149 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00607 Cla-Chr3:7181134 Cla05g01890 Cla-Chr5:30764085 0 dispersed
Cla05g01890 Cla-Chr5:30764085 Cla11g01119 Cla-Chr11:22729888 1.44E-34 dispersed
Cla08g01088 Cla-Chr8:23631944 Cla05g01890 Cla-Chr5:30764085 1.07E-59 dispersed
Cla05g01890 Cla-Chr5:30764085 Cla01g02432 Cla-Chr1:37937835 3.37E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61124 PF02309 AUX_IAA 1.10E-09 CL0072 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01890 K14486 - csv:101216825 1818.13