Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01894 ATGTCTACGCTCGACGCCGGTTCCAAGGTCGAGGAGGTTAAGGAGAAGGAAGAGAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGCTGGGATATAATTGGTCGGAAAAAAGGTTCCGTTGAAGGCAACTTGGTCTCTCCCACTCGCCTTCGCCCGCTCGTGGGCGTTGACATTCGTTTTGTTGCTGCTGGTTGCAGTAAGTTTTTGCTACTCTGTTCAGGGGTTGAGATTTTTTGGGTTTTAAGTAGGTTTTGCTCGGCCAGTGAAGTGGTTTTTGACGTTTTGAATGTTAATCTTGGCGTAGCATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGCAATGAGGCATGTTTACTCTCAACTTTGAAGCTTGGAAGCCGTTTTGGTTTCCTGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACTGTGGTGGTCACTGAGGATGGAAATTCCCTATCCTTCGGTTGGAACAAACATGGCCAGTTGGGTTCAGGCTCAGTAAAAAATGAGATTGAGTCATCTCCTGTGCGTTGTCTCGTTTCTGAAGTGAAAAATACTGCCTGTGGGGGTGAATTCACCGTGTGGTTATCATCTATTGAAGGAGCTTCCATACTCACTGCGGGTCTTCCTCAGTATGGACAGCTTGGTCATGGAACAGATAATGAGTACAACACAAAGGATAGCTCAGTAAGACTTGCTTACGAAGCCCAACCACGCCCCCGAGCAATTGCTTGCCTTTCTGGAGAAAAGATTGTTAAAGTTGCATGTGGAACGAATCATACAGTGGCTGTGGATTCTAATGGCTATGTCTACACGTGGGGCTTTGGCGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCTCGACGTGTCGATGTATTCCAGAGGAAAAATACTTTGCCACCTGATGCTATCATTTCAGCAGGGTCTGTGAACTCTTCTTGTACTGCAGGTGGAGGGCAGCTTTATATGTGGGGAAAAATAAAAAATGCCGGAGATGACTGGATGTATCCCAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCGGGCAACATGCACCATTTTGTGGGTGCCGATAACTCATGCATAAGTTGGGGCCATGCACAATATGGAGAGCTCGGATATGGCCCAATGGGTCAGAAGTCTTCGGCGGTACCCAAAAAGGTTGATATCCTGGAGAACATGCATGTCATAAGTGTTGCATGTGGTGCTGGACACTCTATGGTTGTTGTTGATAGAACAAATGTAGCTGATCGACTTGATCAGCTTGATATACACGATGGGAAAGCTTTTGATGAAGAGAATGCAGTATCGGAAGCGTTACCACAGAGTAAAGGTTCAGCCATCAAGCCAACTCCAAAGGCTGCTAAAGCATCTCAGAATGCCAAGAAGAGGAAGAAATCAAAAGATTTGTCTGACTCGGAGGAAGAAGAGGAGGAAAATGAAGATGGTGACAGCAGTGATGAAGAGGCCAACGGGCTATCAGATACGAGTGAACAGTATGGAAGCAAAAGTAAGGGTAGAGGTAGAGGAAAGGGTAGTAAAAACTCATCCAGTGGAGGGAAAGGCAGTGGTCGTGGACGGGGTCGTCCCCCATCGAACAACAAGAAACCAGCAGCTTCTCAAGGAAAAGCAGTAGGAGCTAAGAGAGTCGGTGAAAGGTTTGCAGCTATGGGGAAGTCTACTTCGTGCTTTAAGATAATTGCGTGCGGTGGCGATTCGAGGGAGAAAGATGACATTGATATTCCTGAGGTATCTATCTCATTGGCTCTTACTTCGGAGTTTTGCTTTTCAACTTTTACTTTTCTTTTAAATTTGTGTTCTACTGCATCGAGTAAGCGTTTGAATGACAAACAAGGCTGGAGTTTTCGAAAGAGATCTACCCGGCAACGAGTACTAAGCAACACTGTGATAGCTGAAATTCCATCTCCTGGAAATAAAGAGAGCTTTGATACTGCTAACATTAACTTCCAGCCACCAACTAACGGTTCTATAGTAGAAAAAGATCCTGGTTTGCAGTGCGCAAGCGAGAAACCTCAATTACAGAGTACTGAAAATCTCAAGGAATCTGAAGCTGTTGATGTCATTCAAAAGGAGAGTAAAGTTGATGTTGATCTCGAGGAACGCAGCGTTATTATTATCCAGACTGTTGTCAGAGGGTGGTTGGCCCGAGGAGAGCTTCTGAAGCTTAAGAATGTGGTTAGGTTGCAAGCTGCTATCCGTGGGTACTTGGTCAGGAAACATGCTGTTGAAACTCTTCGCTGTATTAAGGCCATCATTAAATTGCAAGCTCTTGTGCGTGCACGTTGTGCCCGTTTGGCACTTGAACAGTCACATTCTGAAGAACTAGATGTCAAGCGTACAGAGGATAGCAATACTTATAAGACCTTGGAGAAGGAAAAGTTGAGGAAATCAACTGAGACTTACCTCTCAATTGAGAAATTACTTGGCAACAGCTTTGTTCGACAGCTGCTCGAGTCTACATCAGTCACGGGACCTATCAACGTTAGTTACCATCATTCTAAATCTGAGACTACTTGGAAATGGTTGGAGAGATGGACGTCTTTTTCATCAGTCGATGTTCTGGAGACAAAGGAAGCAGAGTTCATGACAGGGGAGCAAAGAAAAGAGAAGAAAGAAAAACGGTGTGTGTCTGAAGTTAGTGCTGGGATTGACTCTAATGTTCTTTGCAAGTCAGCTGATTCAAGAAGCTGCATTGGGGAATCGGTTGTGCATTCTGAAAGTGAAGATAACTTGATTACTTATGATATGGACAGTGCAGAGTTTCAGCCATGCCAACTTACCTCTTCCATGACTGAGGGTTTGGAGCAGGTATGGCTTAAGGAGGATACAGATGTCTCGAATGTGAAAGAGCACTTGATTAAGGCAAATTCTCTCCCAGATCAAAGTATGCAATTGGTTGCAGATTCGCAGTTGCAGTATAACAGTCATACAGAATTCCAGCAAAACAAGACATCGACCGGGATGTTTCCAGAACAACCAGAGGTGAAAGAGAAAAAGACTATCTTTGGTTCAAGAAGGGCAAGTAATCCAGCTTTCATTGCTGCCCAGTCCAAATTTCAAGAGCTGAGTTCCATGGAAAGTACAGGTAGATCAATCAGTTCAACATATCAAGAAACTGGGGCAGAGTCTTGCTTTGGTGCGACGTCATCTGCTTCAGGTACTGCAGAAGACTTCATCACAAATGGATCCAGGGCGGTTCGAGTTGGTGGCTCTGACTGTGGGACTGAACTTTCTATTACCTCTACTCTTGATTCACCTGATTTATCCGAAGCTGGAGCCTTCGAATATGATCATGAAACCAATGTAACTGAGATATGTGTCCATGACCGTAGCAGCAAGAGGAGCACAGAAATTGACGTGGGTGGTGCTCCCTCCAGTCTAGTGTCAAACTTATATCAACCTCTTCTGGGGTCTCCAGAAAAGTCTGGTGTTATCTCGGGCGAATCCATCAACAAAATAACGGTGAACTCTACTCAAAATGAAGTGAAGCCGGACGTAAATGCATCTGATCTGCAGATAGAACAGTATGCTGAAACAGATAATTACAGGTTGTCCCCATCGGCCTCTTCAAGAAGCCATGTCACTCATCTGGAATCCCAAGGAACACCTTCTAGTCAGATCTCAATAAAATCTAATAAGAGAAAAACTGATGCGAGCAGAAGCAACCAAACGCGTAAGTCCCTCACTGCTGGTAAGAAATCACCCTCAAATTTGCTTCGCAATGTTGATTCGCCAAATCATTTGGAACCTTTGCCTAAAGATGAGAAGATTGAAAAGAGACGCAATTCCTTTGGGTCAGCAAGATCTGATCATATTGAAGAAGAGTCAAGAGAAAGCAGTACTAATCAATCTCTCCCTCATTTCATGCGAGCTACAGAGGCTGCTAGAGCTAAGGTGCAGTTAAATAATTCTCCAAGATCCAGTCCAGATGTCCAAGATGCAAAAATCTACATCAAGAAGAGGCATTCCTTACCTGGTGCCAATGGAAGGCAAGGGTCTCCACGAATCCAAAGATCAACGTCTCAAGCACAAAAGAGCGGAAAGGGAAATGAGAGGAAGTGGCAAAGATAG 4152 44.89 MSTLDAGSKVEEVKEKEEKAGELLFCGATCWDIIGRKKGSVEGNLVSPTRLRPLVGVDIRFVAAGCSKFLLLCSGVEIFWVLSRFCSASEVVFDVLNVNLGVASCHCVALDVEGRCYTWGRNEACLLSTLKLGSRFGFLYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKNTACGGEFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIACLSGEKIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSAVPKKVDILENMHVISVACGAGHSMVVVDRTNVADRLDQLDIHDGKAFDEENAVSEALPQSKGSAIKPTPKAAKASQNAKKRKKSKDLSDSEEEEEENEDGDSSDEEANGLSDTSEQYGSKSKGRGRGKGSKNSSSGGKGSGRGRGRPPSNNKKPAASQGKAVGAKRVGERFAAMGKSTSCFKIIACGGDSREKDDIDIPEVSISLALTSEFCFSTFTFLLNLCSTASSKRLNDKQGWSFRKRSTRQRVLSNTVIAEIPSPGNKESFDTANINFQPPTNGSIVEKDPGLQCASEKPQLQSTENLKESEAVDVIQKESKVDVDLEERSVIIIQTVVRGWLARGELLKLKNVVRLQAAIRGYLVRKHAVETLRCIKAIIKLQALVRARCARLALEQSHSEELDVKRTEDSNTYKTLEKEKLRKSTETYLSIEKLLGNSFVRQLLESTSVTGPINVSYHHSKSETTWKWLERWTSFSSVDVLETKEAEFMTGEQRKEKKEKRCVSEVSAGIDSNVLCKSADSRSCIGESVVHSESEDNLITYDMDSAEFQPCQLTSSMTEGLEQVWLKEDTDVSNVKEHLIKANSLPDQSMQLVADSQLQYNSHTEFQQNKTSTGMFPEQPEVKEKKTIFGSRRASNPAFIAAQSKFQELSSMESTGRSISSTYQETGAESCFGATSSASGTAEDFITNGSRAVRVGGSDCGTELSITSTLDSPDLSEAGAFEYDHETNVTEICVHDRSSKRSTEIDVGGAPSSLVSNLYQPLLGSPEKSGVISGESINKITVNSTQNEVKPDVNASDLQIEQYAETDNYRLSPSASSRSHVTHLESQGTPSSQISIKSNKRKTDASRSNQTRKSLTAGKKSPSNLLRNVDSPNHLEPLPKDEKIEKRRNSFGSARSDHIEEESRESSTNQSLPHFMRATEAARAKVQLNNSPRSSPDVQDAKIYIKKRHSLPGANGRQGSPRIQRSTSQAQKSGKGNERKWQR 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30785382 30799767 - ClCG05G018530.2 Cla05g01894 273384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01894 1383 ProSiteProfiles IQ motif profile. 748 777 IPR000048 GO:0005515
Cla05g01894 1383 ProSiteProfiles IQ motif profile. 726 754 IPR000048 GO:0005515
Cla05g01894 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 728 793 IPR027417 -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 493 511 - -
Cla05g01894 1383 Pfam Regulator of chromosome condensation (RCC1) repeat 142 171 - -
Cla05g01894 1383 PANTHER PROTEIN RCC2 12 558 IPR028641 -
Cla05g01894 1383 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 333 IPR000408 -
Cla05g01894 1383 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Cla05g01894 1383 PRINTS Chromosome condensation regulator RCC1 signature 142 155 IPR000408 -
Cla05g01894 1383 PRINTS Chromosome condensation regulator RCC1 signature 280 294 IPR000408 -
Cla05g01894 1383 PRINTS Chromosome condensation regulator RCC1 signature 161 177 IPR000408 -
Cla05g01894 1383 SMART iq_5 725 747 IPR000048 GO:0005515
Cla05g01894 1383 SMART iq_5 748 769 IPR000048 GO:0005515
Cla05g01894 1383 SMART iq_5 773 795 IPR000048 GO:0005515
Cla05g01894 1383 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 212 277 IPR000408 -
Cla05g01894 1383 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 432 IPR000408 -
Cla05g01894 1383 Pfam IQ calmodulin-binding motif 727 743 IPR000048 GO:0005515
Cla05g01894 1383 Pfam IQ calmodulin-binding motif 750 767 IPR000048 GO:0005515
Cla05g01894 1383 Gene3D - 17 238 IPR009091 -
Cla05g01894 1383 Gene3D - 724 773 - -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1357 1375 - -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1274 1307 - -
Cla05g01894 1383 ProSiteProfiles IQ motif profile. 776 803 IPR000048 GO:0005515
Cla05g01894 1383 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 419 429 IPR000408 -
Cla05g01894 1383 SUPERFAMILY RCC1/BLIP-II 102 432 IPR009091 -
Cla05g01894 1383 Gene3D - 239 446 IPR009091 -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1249 1270 - -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1210 1313 - -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1210 1239 - -
Cla05g01894 1383 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 145 155 IPR000408 -
Cla05g01894 1383 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 159 209 IPR000408 -
Cla05g01894 1383 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 264 274 IPR000408 -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 456 566 - -
Cla05g01894 1383 MobiDBLite consensus disorder prediction 1327 1383 - -
Cla05g01894 1383 Pfam Regulator of chromosome condensation (RCC1) repeat 215 274 IPR000408 -
Cla05g01894 1383 Pfam Regulator of chromosome condensation (RCC1) repeat 383 429 IPR000408 -
Cla05g01894 1383 Pfam Regulator of chromosome condensation (RCC1) repeat 277 311 IPR000408 -
Cla05g01894 1383 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 114 158 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01894 - - - csv:101203904 1253.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01894 Cla-Chr5:30785382 Cla04g00201 Cla-Chr4:6478855 4.91E-17 dispersed
Cla05g01894 Cla-Chr5:30785382 Cla08g01436 Cla-Chr8:27221111 4.59E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62