Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01900 ATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCCACAAACAGGCAAGTCACTTACTCCAAACGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCTAGCACTGGAAAACTCCACGAGTATATCAGCCCTGCCACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTGAAGAAGCTTAAAGATGTGAATCGAAATCTCCGCAAGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATTAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGACAAATACACAAGAGTCTACTACAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTGGAATAGGAGATTATGAGTCAATTATGGGATTCCCAGGCGGTGGACATCCTCGCATATTTGCATTGCGCCTCCAGCCCAACCACGGCCATAGCCATACCCACACCCACACCCACAACCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACCTATCCACTACTCGAGTAG 747 46.05 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVILNQIETHKKKLKSVGQIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGDYESIMGFPGGGHPRIFALRLQPNHGHSHTHTHTHNHNHPNIHVHPPSDLTTYPLLE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30837316 30841160 - ClCG05G018600.2 Cla05g01900 273390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01900 248 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g01900 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 Coils Coil 84 111 - -
Cla05g01900 248 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Cla05g01900 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Cla05g01900 248 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cla05g01900 248 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g01900 248 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cla05g01900 248 MobiDBLite consensus disorder prediction 215 248 - -
Cla05g01900 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 MobiDBLite consensus disorder prediction 217 231 - -
Cla05g01900 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla05g01900 248 PANTHER APETALA3 1 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01900 Cla-Chr5:30837316 Cla11g01559 Cla-Chr11:29321179 7.09E-43 dispersed
Cla05g01900 Cla-Chr5:30837316 Cla06g00019 Cla-Chr6:245023 5.63E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61125 PF01486 K-box 1.20E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01900 K09264 - csv:101218008 419.083