Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01900 | ATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCCACAAACAGGCAAGTCACTTACTCCAAACGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCTAGCACTGGAAAACTCCACGAGTATATCAGCCCTGCCACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTGAAGAAGCTTAAAGATGTGAATCGAAATCTCCGCAAGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATTAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGACAAATACACAAGAGTCTACTACAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTGGAATAGGAGATTATGAGTCAATTATGGGATTCCCAGGCGGTGGACATCCTCGCATATTTGCATTGCGCCTCCAGCCCAACCACGGCCATAGCCATACCCACACCCACACCCACAACCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACCTATCCACTACTCGAGTAG | 747 | 46.05 | MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVILNQIETHKKKLKSVGQIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGDYESIMGFPGGGHPRIFALRLQPNHGHSHTHTHTHNHNHPNIHVHPPSDLTTYPLLE | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30837316 | 30841160 | - | ClCG05G018600.2 | Cla05g01900 | 273390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01900 | 248 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g01900 | 248 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | Coils | Coil | 84 | 111 | - | - | |
Cla05g01900 | 248 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 223 | - | - | |
Cla05g01900 | 248 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | Pfam | K-box region | 82 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g01900 | 248 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Cla05g01900 | 248 | MobiDBLite | consensus disorder prediction | 215 | 248 | - | - | |
Cla05g01900 | 248 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | MobiDBLite | consensus disorder prediction | 217 | 231 | - | - | |
Cla05g01900 | 248 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g01900 | 248 | PANTHER | APETALA3 | 1 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01900 | Cla-Chr5:30837316 | Cla11g01559 | Cla-Chr11:29321179 | 7.09E-43 | dispersed | |
Cla05g01900 | Cla-Chr5:30837316 | Cla06g00019 | Cla-Chr6:245023 | 5.63E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61125 | PF01486 | K-box | 1.20E-21 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01900 | K09264 | - | csv:101218008 | 419.083 |