Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01902 ATGACGGATTTGTTCTATTTAGATCGGAAACAAGAGGAAGATCCAGAAGAAAGAGCAAGATCAGAACAACAATTGTTTTTATACAGCAGATCAAACAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCACAATATACTCACAACCATCATCATCCTCAACAACAACAAAATGTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGAACGACGAGCTTCATGATCAACGGCTCTGATCATGACTTTACTTCAAGATCAGGGTTTACTATGATGAGACATGGACATGGAGGAGGATCAGGAGGAGCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCTCATTTGAGGTGTAGAACTTGTTGTAAGAGTCGAGGGTTTCACTGTCAAACTCATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGTCGGGAACGCCAGCAACAACGTCACCAACAATTTCGAACAGATCAGTCAGATCAGATCACTCCCAAAAACCATAGACAACATCAACTATCTCTTCCTCTTACTACCAATTCGGGGTTAGAAGTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCCGAAAGCAGTCAAAATTTGAGCACCGGCGGGGACGACAGAGAAGACGGTGGCCAAGGGTTGGATCTGGTGATCGGAGCATCCAACAGTGGTGGAAGAGTTAACCAAACCACCCCATTTGTGGAGTCTTCCATGTATCCCATCCCAATCAACACATTCGAACGATCAAGTACGGAGTCTTGCGGATCAACGTGGCTAACCTATTATTAG 936 43.48 MTDLFYLDRKQEEDPEERARSEQQLFLYSRSNNNQEIYSTGLQIWPQYTHNHHHPQQQQNVENYISFGVGPSRTTSFMINGSDHDFTSRSGFTMMRHGHGGGSGGASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQSDQITPKNHRQHQLSLPLTTNSGLEVANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSTGGDDREDGGQGLDLVIGASNSGGRVNQTTPFVESSMYPIPINTFERSSTESCGSTWLTYY 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30859567 30863597 + ClCG05G018620.2 Cla05g01902 273392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01902 311 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 295 - -
Cla05g01902 311 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Cla05g01902 311 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 196 243 IPR006511 -
Cla05g01902 311 MobiDBLite consensus disorder prediction 163 181 - -
Cla05g01902 311 MobiDBLite consensus disorder prediction 150 181 - -
Cla05g01902 311 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 295 IPR007818 GO:0003700|GO:0006355
Cla05g01902 311 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g01902 311 Pfam Domain of unknown function (DUF702) 108 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01902 Cla08g01447 CCT
Cla05g01902 Cla08g01447 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01902 Cla-Chr5:30859567 Cla05g02685 Cla-Chr5:38037487 2.60E-36 dispersed
Cla09g01313 Cla-Chr9:20577197 Cla05g01902 Cla-Chr5:30859567 9.68E-124 transposed
Cla01g01952 Cla-Chr1:34179641 Cla05g01902 Cla-Chr5:30859567 1.91E-48 wgd
Cla05g01902 Cla-Chr5:30859567 Cla07g00839 Cla-Chr7:23199383 2.49E-51 wgd
Cla05g01902 Cla-Chr5:30859567 Cla08g01447 Cla-Chr8:27346475 1.03E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61126 PF05142 DUF702 1.20E-58 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01902 - - csv:101218246 439.884